CRISPRone

CRISPRone report for GCA_900165645.1_16852_2_51

♦ Seq 1: FURJ01000006.1 Clostridioides difficile strain VRECD0057 genome assembly, contig: ERS716944SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 261533 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18341-19098 bp 2 Locus 2: 195869-196953 bp Zoom in on locus 1 x12 Zoom in on locus 2 x17 CRISPR array Location: 18341-19098 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18341-19098 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 195869-196953 bp Num of repeats: 17 Spacers: s12-s27 CRISPR array Location: 195869-196953 bp Num of repeats: 17 Spacers: s12-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18341-19098 bp]: array | spacers
           [Locus range 195869-196953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURJ01000004.1 Clostridioides difficile strain VRECD0057 genome assembly, contig: ERS716944SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 531330 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45050-45144 bp 2 Locus 2: 267413-278524 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 45050-45144 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 45050-45144 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267413-268300 bp Gene: pfam01881:cas6 Type: other Location: 268378-269115 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 269121-270971 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270973-271887 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271889-272590 bp Gene: COG1203:cas3 Type: Type-I Location: 272601-274922 bp Gene: pfam01930:cas4 Type: Type-I Location: 274937-275488 bp Gene: cd09722:cas1 Type: universal Location: 275491-276471 bp Gene: cd09725:cas2 Type: universal Location: 276474-276740 bp CRISPR array Location: 276924-278524 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 276924-278524 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45050-45144 bp]: array | spacers
           [Locus range 276924-278524 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURJ01000003.1 Clostridioides difficile strain VRECD0057 genome assembly, contig: ERS716944SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 580367 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85061-89619 bp 2 Locus 2: 247440-248194 bp 3 Locus 3: 459873-460432 bp Zoom in on locus 1 x5 x4 x8 Zoom in on locus 2 x12 Zoom in on locus 3 x9 CRISPR array Location: 85061-85353 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 85061-85353 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 87036-87262 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 87036-87262 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 89124-89619 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 89124-89619 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 247440-248194 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 247440-248194 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 459873-460432 bp Num of repeats: 9 Spacers: s26-s33 CRISPR array Location: 459873-460432 bp Num of repeats: 9 Spacers: s26-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 85061-85353 bp]: array | spacers
           [Locus range 87036-87262 bp]: array | spacers
           [Locus range 89124-89619 bp]: array | spacers
           [Locus range 247440-248194 bp]: array | spacers
           [Locus range 459873-460432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FURJ01000001.1 Clostridioides difficile strain VRECD0057 genome assembly, contig: ERS716944SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1034837 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244752-245110 bp 2 Locus 2: 318392-326713 bp 3 Locus 3: 489985-490602 bp 4 Locus 4: 871906-872067 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 Zoom in on locus 4 x3 CRISPR array Location: 244752-245110 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 244752-245110 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318392-319501 bp Gene: unk Type: unknown Location: 319935-320111 bp Gene: pfam01881:cas6 Type: other Location: 320212-320949 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320954-322429 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322449-323465 bp Gene: cd09693:cas5 Type: Type-I Location: 323481-324278 bp Gene: cd09641:cas3HD Type: Type-I Location: 324305-326713 bp CRISPR array Location: 489985-490602 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 489985-490602 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 871906-872067 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 871906-872067 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244752-245110 bp]: array | spacers
           [Locus range 489985-490602 bp]: array | spacers
           [Locus range 871906-872067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)