CRISPRone

CRISPRone report for GCA_900165655.1_16852_2_52

♦ Seq 1: FURK01000017.1 Clostridioides difficile strain VRECD0058 genome assembly, contig: ERS716945SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 14106 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5036-5263 bp Zoom in on locus 1 x4 CRISPR array Location: 5036-5263 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5036-5263 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5036-5263 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURK01000002.1 Clostridioides difficile strain VRECD0058 genome assembly, contig: ERS716945SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 687605 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 383955-384376 bp 2 Locus 2: 494670-494897 bp 3 Locus 3: 584645-588062 bp Zoom in on locus 1 x7 Zoom in on locus 2 x4 Zoom in on locus 3 x5 x13 CRISPR array Location: 383955-384376 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 383955-384376 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 494670-494897 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 494670-494897 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 584645-584936 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 584645-584936 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 587239-588062 bp Num of repeats: 13 Spacers: s14-s25 CRISPR array Location: 587239-588062 bp Num of repeats: 13 Spacers: s14-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 383955-384376 bp]: array | spacers
           [Locus range 494670-494897 bp]: array | spacers
           [Locus range 584645-584936 bp]: array | spacers
           [Locus range 587239-588062 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURK01000001.1 Clostridioides difficile strain VRECD0058 genome assembly, contig: ERS716945SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1274422 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109215-109576 bp 2 Locus 2: 428702-428863 bp 3 Locus 3: 584318-595780 bp 4 Locus 4: 785283-786033 bp 5 Locus 5: 948001-955866 bp 6 Locus 6: 1029114-1029671 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x37 Zoom in on locus 4 x12 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 109215-109576 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 109215-109576 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 428702-428863 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 428702-428863 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 584318-584608 bp Gene: cd09722:cas1 Type: universal Location: 584819-585826 bp Gene: pfam01930:cas4 Type: Type-I Location: 585852-586346 bp CRISPR array Location: 586431-588838 bp Num of repeats: 37 Spacers: s8-s43 CRISPR array Location: 586431-588838 bp Num of repeats: 37 Spacers: s8-s43 Gene: cd09641:cas3HD Type: Type-I Location: 589028-591586 bp Gene: cd09693:cas5 Type: Type-I Location: 591610-592350 bp Gene: pfam05107:cas7b Type: Type-I Location: 592352-593341 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 593334-595073 bp Gene: cd09652:cas6 Type: other Location: 595085-595780 bp CRISPR array Location: 785283-786033 bp Num of repeats: 12 Spacers: s44-s54 CRISPR array Location: 785283-786033 bp Num of repeats: 12 Spacers: s44-s54 Gene: cd09641:cas3HD Type: Type-I Location: 948001-950409 bp Gene: cd09693:cas5 Type: Type-I Location: 950436-951233 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 951249-952262 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 952282-953757 bp Gene: pfam01881:cas6 Type: other Location: 953762-954499 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 954757-955866 bp CRISPR array Location: 1029114-1029671 bp Num of repeats: 9 Spacers: s55-s62 CRISPR array Location: 1029114-1029671 bp Num of repeats: 9 Spacers: s55-s62 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 109215-109576 bp]: array | spacers
           [Locus range 428702-428863 bp]: array | spacers
           [Locus range 586431-588838 bp]: array | spacers
           [Locus range 785283-786033 bp]: array | spacers
           [Locus range 1029114-1029671 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)