CRISPRone

CRISPRone report for GCA_900165665.1_16852_2_53

♦ Seq 1: FURL01000002.1 Clostridioides difficile strain VRECD0060 genome assembly, contig: ERS716946SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 412085 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17704-18196 bp 2 Locus 2: 109210-114545 bp Zoom in on locus 1 x8 Zoom in on locus 2 x4 x13 x4 CRISPR array Location: 17704-18196 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 17704-18196 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 109210-109436 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 109210-109436 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 110038-110858 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 110038-110858 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 114320-114545 bp Num of repeats: 4 Spacers: s23-s25 CRISPR array Location: 114320-114545 bp Num of repeats: 4 Spacers: s23-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17704-18196 bp]: array | spacers
           [Locus range 109210-109436 bp]: array | spacers
           [Locus range 110038-110858 bp]: array | spacers
           [Locus range 114320-114545 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURL01000001.1 Clostridioides difficile strain VRECD0060 genome assembly, contig: ERS716946SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 808743 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 235512-235868 bp 2 Locus 2: 309134-316999 bp 3 Locus 3: 479089-479977 bp 4 Locus 4: 778144-779418 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x14 Zoom in on locus 4 x20 CRISPR array Location: 235512-235868 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 235512-235868 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 309134-310243 bp Gene: pfam01881:cas6 Type: other Location: 310501-311238 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 311243-312718 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 312738-313751 bp Gene: cd09693:cas5 Type: Type-I Location: 313767-314564 bp Gene: cd09641:cas3HD Type: Type-I Location: 314591-316999 bp CRISPR array Location: 479089-479977 bp Num of repeats: 14 Spacers: s6-s18 CRISPR array Location: 479089-479977 bp Num of repeats: 14 Spacers: s6-s18 CRISPR array Location: 778144-779418 bp Num of repeats: 20 Spacers: s19-s37 CRISPR array Location: 778144-779418 bp Num of repeats: 20 Spacers: s19-s37 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 235512-235868 bp]: array | spacers
           [Locus range 479089-479977 bp]: array | spacers
           [Locus range 778144-779418 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURL01000013.1 Clostridioides difficile strain VRECD0060 genome assembly, contig: ERS716946SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 90385 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53086-54626 bp Zoom in on locus 1 x24 CRISPR array Location: 53086-54626 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 53086-54626 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53086-54626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FURL01000007.1 Clostridioides difficile strain VRECD0060 genome assembly, contig: ERS716946SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 269579 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91068-91494 bp Zoom in on locus 1 x7 CRISPR array Location: 91068-91494 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 91068-91494 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91068-91494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)