CRISPRone

CRISPRone report for GCA_900165675.1_16852_2_54

♦ Seq 1: FURM01000002.1 Clostridioides difficile strain VRECD0066 genome assembly, contig: ERS716947SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 687001 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 383896-384317 bp 2 Locus 2: 494611-494838 bp 3 Locus 3: 584586-588003 bp Zoom in on locus 1 x7 Zoom in on locus 2 x4 Zoom in on locus 3 x5 x13 CRISPR array Location: 383896-384317 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 383896-384317 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 494611-494838 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 494611-494838 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 584586-584877 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 584586-584877 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 587180-588003 bp Num of repeats: 13 Spacers: s14-s25 CRISPR array Location: 587180-588003 bp Num of repeats: 13 Spacers: s14-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 383896-384317 bp]: array | spacers
           [Locus range 494611-494838 bp]: array | spacers
           [Locus range 584586-584877 bp]: array | spacers
           [Locus range 587180-588003 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURM01000017.1 Clostridioides difficile strain VRECD0066 genome assembly, contig: ERS716947SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 14144 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8759-8985 bp Zoom in on locus 1 x4 CRISPR array Location: 8759-8985 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 8759-8985 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8759-8985 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURM01000001.1 Clostridioides difficile strain VRECD0066 genome assembly, contig: ERS716947SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1193704 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38357-38718 bp 2 Locus 2: 347849-348010 bp 3 Locus 3: 503600-515062 bp 4 Locus 4: 704565-705315 bp 5 Locus 5: 867283-875148 bp 6 Locus 6: 948396-948953 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x37 Zoom in on locus 4 x12 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38357-38718 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38357-38718 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 347849-348010 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 347849-348010 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 503600-503890 bp Gene: cd09722:cas1 Type: universal Location: 504101-505108 bp Gene: pfam01930:cas4 Type: Type-I Location: 505134-505628 bp CRISPR array Location: 505713-508120 bp Num of repeats: 37 Spacers: s8-s43 CRISPR array Location: 505713-508120 bp Num of repeats: 37 Spacers: s8-s43 Gene: cd09641:cas3HD Type: Type-I Location: 508310-510868 bp Gene: cd09693:cas5 Type: Type-I Location: 510892-511632 bp Gene: pfam05107:cas7b Type: Type-I Location: 511634-512623 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 512616-514355 bp Gene: cd09652:cas6 Type: other Location: 514367-515062 bp CRISPR array Location: 704565-705315 bp Num of repeats: 12 Spacers: s44-s54 CRISPR array Location: 704565-705315 bp Num of repeats: 12 Spacers: s44-s54 Gene: cd09641:cas3HD Type: Type-I Location: 867283-869691 bp Gene: cd09693:cas5 Type: Type-I Location: 869718-870515 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 870531-871544 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 871564-873039 bp Gene: pfam01881:cas6 Type: other Location: 873044-873781 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 874039-875148 bp CRISPR array Location: 948396-948953 bp Num of repeats: 9 Spacers: s55-s62 CRISPR array Location: 948396-948953 bp Num of repeats: 9 Spacers: s55-s62 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38357-38718 bp]: array | spacers
           [Locus range 347849-348010 bp]: array | spacers
           [Locus range 505713-508120 bp]: array | spacers
           [Locus range 704565-705315 bp]: array | spacers
           [Locus range 948396-948953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)