CRISPRone

CRISPRone report for GCA_900165685.1_16852_2_55

♦ Seq 1: FURO01000015.1 Clostridioides difficile strain VRECD0067 genome assembly, contig: ERS716948SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 14687 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5164-5391 bp Zoom in on locus 1 x4 CRISPR array Location: 5164-5391 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5164-5391 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5164-5391 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURO01000003.1 Clostridioides difficile strain VRECD0067 genome assembly, contig: ERS716948SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 687659 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 383987-384408 bp 2 Locus 2: 494702-494929 bp 3 Locus 3: 584812-588229 bp Zoom in on locus 1 x7 Zoom in on locus 2 x4 Zoom in on locus 3 x5 x13 CRISPR array Location: 383987-384408 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 383987-384408 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 494702-494929 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 494702-494929 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 584812-585103 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 584812-585103 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 587406-588229 bp Num of repeats: 13 Spacers: s14-s25 CRISPR array Location: 587406-588229 bp Num of repeats: 13 Spacers: s14-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 383987-384408 bp]: array | spacers
           [Locus range 494702-494929 bp]: array | spacers
           [Locus range 584812-585103 bp]: array | spacers
           [Locus range 587406-588229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURO01000001.1 Clostridioides difficile strain VRECD0067 genome assembly, contig: ERS716948SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1193960 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38363-38724 bp 2 Locus 2: 348016-348177 bp 3 Locus 3: 503913-515375 bp 4 Locus 4: 704878-705628 bp 5 Locus 5: 867596-875461 bp 6 Locus 6: 948709-949266 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x37 Zoom in on locus 4 x12 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38363-38724 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38363-38724 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 348016-348177 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 348016-348177 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 503913-504203 bp Gene: cd09722:cas1 Type: universal Location: 504414-505421 bp Gene: pfam01930:cas4 Type: Type-I Location: 505447-505941 bp CRISPR array Location: 506026-508433 bp Num of repeats: 37 Spacers: s8-s43 CRISPR array Location: 506026-508433 bp Num of repeats: 37 Spacers: s8-s43 Gene: cd09641:cas3HD Type: Type-I Location: 508623-511181 bp Gene: cd09693:cas5 Type: Type-I Location: 511205-511945 bp Gene: pfam05107:cas7b Type: Type-I Location: 511947-512936 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 512929-514668 bp Gene: cd09652:cas6 Type: other Location: 514680-515375 bp CRISPR array Location: 704878-705628 bp Num of repeats: 12 Spacers: s44-s54 CRISPR array Location: 704878-705628 bp Num of repeats: 12 Spacers: s44-s54 Gene: cd09641:cas3HD Type: Type-I Location: 867596-870004 bp Gene: cd09693:cas5 Type: Type-I Location: 870031-870828 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 870844-871857 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 871877-873352 bp Gene: pfam01881:cas6 Type: other Location: 873357-874094 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 874352-875461 bp CRISPR array Location: 948709-949266 bp Num of repeats: 9 Spacers: s55-s62 CRISPR array Location: 948709-949266 bp Num of repeats: 9 Spacers: s55-s62 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38363-38724 bp]: array | spacers
           [Locus range 348016-348177 bp]: array | spacers
           [Locus range 506026-508433 bp]: array | spacers
           [Locus range 704878-705628 bp]: array | spacers
           [Locus range 948709-949266 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)