CRISPRone

CRISPRone report for GCA_900165695.1_16852_2_56

♦ Seq 1: FURN01000006.1 Clostridioides difficile strain VRECD0068 genome assembly, contig: ERS716949SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 316307 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74628-74721 bp Zoom in on locus 1 x2 CRISPR array Location: 74628-74721 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 74628-74721 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 74628-74721 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURN01000001.1 Clostridioides difficile strain VRECD0068 genome assembly, contig: ERS716949SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 640012 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 373623-383821 bp Zoom in on locus 1 x11 Gene: pfam13280:WYL Type: other Location: 373623-374510 bp Gene: pfam01881:cas6 Type: other Location: 374588-375325 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 375331-377181 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 377183-378097 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 378099-378800 bp Gene: COG1203:cas3 Type: Type-I Location: 378811-381132 bp Gene: pfam01930:cas4 Type: Type-I Location: 381147-381698 bp Gene: cd09722:cas1 Type: universal Location: 381701-382681 bp Gene: cd09725:cas2 Type: universal Location: 382684-382950 bp CRISPR array Location: 383134-383821 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 383134-383821 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 383134-383821 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURN01000002.1 Clostridioides difficile strain VRECD0068 genome assembly, contig: ERS716949SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 572289 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78149-79228 bp 2 Locus 2: 189581-190401 bp Zoom in on locus 1 x17 Zoom in on locus 2 x13 CRISPR array Location: 78149-79228 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 78149-79228 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 189581-190401 bp Num of repeats: 13 Spacers: s17-s28 CRISPR array Location: 189581-190401 bp Num of repeats: 13 Spacers: s17-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78149-79228 bp]: array | spacers
           [Locus range 189581-190401 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FURN01000003.1 Clostridioides difficile strain VRECD0068 genome assembly, contig: ERS716949SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 532780 bp; # of CRISPR array = 3; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 412-6901 bp 2 Locus 2: 170279-171100 bp 3 Locus 3: 472405-473489 bp 4 Locus 4: 519168-519527 bp Zoom in on locus 1 Zoom in on locus 2 x13 Zoom in on locus 3 x17 Zoom in on locus 4 x6 Gene: pfam01881:cas6 Type: other Location: 412-1149 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1154-2620 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2640-3653 bp Gene: cd09693:cas5 Type: Type-I Location: 3669-4466 bp Gene: cd09641:cas3HD Type: Type-I Location: 4493-6901 bp CRISPR array Location: 170279-171100 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 170279-171100 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 472405-473489 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 472405-473489 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 519168-519527 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 519168-519527 bp Num of repeats: 6 Spacers: s29-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 170279-171100 bp]: array | spacers
           [Locus range 472405-473489 bp]: array | spacers
           [Locus range 519168-519527 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FURN01000004.1 Clostridioides difficile strain VRECD0068 genome assembly, contig: ERS716949SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 444957 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6313-6474 bp 2 Locus 2: 148571-149911 bp Zoom in on locus 1 x3 Zoom in on locus 2 x21 CRISPR array Location: 6313-6474 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6313-6474 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 148571-149911 bp Num of repeats: 21 Spacers: s3-s22 CRISPR array Location: 148571-149911 bp Num of repeats: 21 Spacers: s3-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6313-6474 bp]: array | spacers
           [Locus range 148571-149911 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FURN01000014.1 Clostridioides difficile strain VRECD0068 genome assembly, contig: ERS716949SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 38921 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9148-11776 bp Zoom in on locus 1 x6 x7 CRISPR array Location: 9148-9503 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 9148-9503 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 11353-11776 bp Num of repeats: 7 Spacers: s6-s11 CRISPR array Location: 11353-11776 bp Num of repeats: 7 Spacers: s6-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9148-9503 bp]: array | spacers
           [Locus range 11353-11776 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)