CRISPRone

CRISPRone report for GCA_900165705.1_16852_2_57

♦ Seq 1: FURP01000001.1 Clostridioides difficile strain VRECD0059 genome assembly, contig: ERS716950SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1169374 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244697-245255 bp 2 Locus 2: 318502-326367 bp 3 Locus 3: 488335-489086 bp 4 Locus 4: 678588-690050 bp 5 Locus 5: 845505-845667 bp 6 Locus 6: 1130673-1131033 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x37 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 244697-245255 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244697-245255 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318502-319611 bp Gene: pfam01881:cas6 Type: other Location: 319869-320606 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320611-322086 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322106-323119 bp Gene: cd09693:cas5 Type: Type-I Location: 323135-323932 bp Gene: cd09641:cas3HD Type: Type-I Location: 323959-326367 bp CRISPR array Location: 488335-489086 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 488335-489086 bp Num of repeats: 12 Spacers: s9-s19 Gene: cd09652:cas6 Type: other Location: 678588-679283 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 679295-681034 bp Gene: pfam05107:cas7b Type: Type-I Location: 681027-682016 bp Gene: cd09693:cas5 Type: Type-I Location: 682018-682758 bp Gene: cd09641:cas3HD Type: Type-I Location: 682782-685340 bp CRISPR array Location: 685530-687938 bp Num of repeats: 37 Spacers: s20-s55 CRISPR array Location: 685530-687938 bp Num of repeats: 37 Spacers: s20-s55 Gene: pfam01930:cas4 Type: Type-I Location: 688022-688516 bp Gene: cd09722:cas1 Type: universal Location: 688542-689549 bp Gene: cd09725:cas2 Type: universal Location: 689760-690050 bp CRISPR array Location: 845505-845667 bp Num of repeats: 3 Spacers: s56-s57 CRISPR array Location: 845505-845667 bp Num of repeats: 3 Spacers: s56-s57 CRISPR array Location: 1130673-1131033 bp Num of repeats: 6 Spacers: s58-s62 CRISPR array Location: 1130673-1131033 bp Num of repeats: 6 Spacers: s58-s62 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244697-245255 bp]: array | spacers
           [Locus range 488335-489086 bp]: array | spacers
           [Locus range 685530-687938 bp]: array | spacers
           [Locus range 845505-845667 bp]: array | spacers
           [Locus range 1130673-1131033 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURP01000002.1 Clostridioides difficile strain VRECD0059 genome assembly, contig: ERS716950SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 702121 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 100029-103445 bp 2 Locus 2: 193194-193420 bp 3 Locus 3: 303715-304135 bp 4 Locus 4: 512302-512528 bp Zoom in on locus 1 x13 x5 Zoom in on locus 2 x4 Zoom in on locus 3 x7 Zoom in on locus 4 x4 CRISPR array Location: 100029-100851 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 100029-100851 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 103155-103445 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 103155-103445 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 193194-193420 bp Num of repeats: 4 Spacers: s17-s19 CRISPR array Location: 193194-193420 bp Num of repeats: 4 Spacers: s17-s19 CRISPR array Location: 303715-304135 bp Num of repeats: 7 Spacers: s20-s25 CRISPR array Location: 303715-304135 bp Num of repeats: 7 Spacers: s20-s25 CRISPR array Location: 512302-512528 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 512302-512528 bp Num of repeats: 4 Spacers: s26-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 100029-100851 bp]: array | spacers
           [Locus range 103155-103445 bp]: array | spacers
           [Locus range 193194-193420 bp]: array | spacers
           [Locus range 303715-304135 bp]: array | spacers
           [Locus range 512302-512528 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)