CRISPRone

CRISPRone report for GCA_900165715.1_16852_2_58

♦ Seq 1: FURR01000001.1 Clostridioides difficile strain VRECD0061 genome assembly, contig: ERS716951SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 842787 bp; # of CRISPR array = 7; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85061-89619 bp 2 Locus 2: 248120-248874 bp 3 Locus 3: 460553-461112 bp 4 Locus 4: 600428-601185 bp 5 Locus 5: 778065-779149 bp Zoom in on locus 1 x5 x4 x8 Zoom in on locus 2 x12 Zoom in on locus 3 x9 Zoom in on locus 4 x12 Zoom in on locus 5 x17 CRISPR array Location: 85061-85353 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 85061-85353 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 87036-87262 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 87036-87262 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 89124-89619 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 89124-89619 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 248120-248874 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 248120-248874 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 460553-461112 bp Num of repeats: 9 Spacers: s26-s33 CRISPR array Location: 460553-461112 bp Num of repeats: 9 Spacers: s26-s33 CRISPR array Location: 600428-601185 bp Num of repeats: 12 Spacers: s34-s44 CRISPR array Location: 600428-601185 bp Num of repeats: 12 Spacers: s34-s44 CRISPR array Location: 778065-779149 bp Num of repeats: 17 Spacers: s45-s60 CRISPR array Location: 778065-779149 bp Num of repeats: 17 Spacers: s45-s60 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 85061-85353 bp]: array | spacers
           [Locus range 87036-87262 bp]: array | spacers
           [Locus range 89124-89619 bp]: array | spacers
           [Locus range 248120-248874 bp]: array | spacers
           [Locus range 460553-461112 bp]: array | spacers
           [Locus range 600428-601185 bp]: array | spacers
           [Locus range 778065-779149 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURR01000002.1 Clostridioides difficile strain VRECD0061 genome assembly, contig: ERS716951SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 576477 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85678-86294 bp 2 Locus 2: 249566-257887 bp 3 Locus 3: 331170-331527 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 85678-86294 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 85678-86294 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 249566-251974 bp Gene: cd09693:cas5 Type: Type-I Location: 252001-252798 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 252814-253830 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 253850-255325 bp Gene: pfam01881:cas6 Type: other Location: 255330-256067 bp Gene: unk Type: unknown Location: 256168-256344 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 256778-257887 bp CRISPR array Location: 331170-331527 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 331170-331527 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 85678-86294 bp]: array | spacers
           [Locus range 331170-331527 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURR01000005.1 Clostridioides difficile strain VRECD0061 genome assembly, contig: ERS716951SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 531224 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252880-264017 bp 2 Locus 2: 486257-486350 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 252880-254479 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252880-254479 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254663-254929 bp Gene: cd09722:cas1 Type: universal Location: 254932-255912 bp Gene: pfam01930:cas4 Type: Type-I Location: 255915-256433 bp Gene: COG1203:cas3 Type: Type-I Location: 256481-258802 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258813-259514 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259516-260430 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260432-262282 bp Gene: pfam01881:cas6 Type: other Location: 262288-263082 bp Gene: pfam13280:WYL Type: other Location: 263103-264017 bp CRISPR array Location: 486257-486350 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 486257-486350 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252880-254479 bp]: array | spacers
           [Locus range 486257-486350 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FURR01000003.1 Clostridioides difficile strain VRECD0061 genome assembly, contig: ERS716951SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 545114 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248722-248882 bp Zoom in on locus 1 x3 CRISPR array Location: 248722-248882 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 248722-248882 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 248722-248882 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)