CRISPRone

CRISPRone report for GCA_900165725.1_16852_2_59

♦ Seq 1: FURQ01000001.1 Clostridioides difficile strain VRECD0062 genome assembly, contig: ERS716952SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1240284 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244752-245310 bp 2 Locus 2: 318557-326422 bp 3 Locus 3: 488390-489141 bp 4 Locus 4: 678643-690105 bp 5 Locus 5: 845560-845722 bp 6 Locus 6: 1130728-1131088 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x37 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 244752-245310 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244752-245310 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318557-319666 bp Gene: pfam01881:cas6 Type: other Location: 319924-320661 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320666-322141 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322161-323174 bp Gene: cd09693:cas5 Type: Type-I Location: 323190-323987 bp Gene: cd09641:cas3HD Type: Type-I Location: 324014-326422 bp CRISPR array Location: 488390-489141 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 488390-489141 bp Num of repeats: 12 Spacers: s9-s19 Gene: cd09652:cas6 Type: other Location: 678643-679338 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 679350-681089 bp Gene: pfam05107:cas7b Type: Type-I Location: 681082-682071 bp Gene: cd09693:cas5 Type: Type-I Location: 682073-682813 bp Gene: cd09641:cas3HD Type: Type-I Location: 682837-685395 bp CRISPR array Location: 685585-687993 bp Num of repeats: 37 Spacers: s20-s55 CRISPR array Location: 685585-687993 bp Num of repeats: 37 Spacers: s20-s55 Gene: pfam01930:cas4 Type: Type-I Location: 688077-688571 bp Gene: cd09722:cas1 Type: universal Location: 688597-689604 bp Gene: cd09725:cas2 Type: universal Location: 689815-690105 bp CRISPR array Location: 845560-845722 bp Num of repeats: 3 Spacers: s56-s57 CRISPR array Location: 845560-845722 bp Num of repeats: 3 Spacers: s56-s57 CRISPR array Location: 1130728-1131088 bp Num of repeats: 6 Spacers: s58-s62 CRISPR array Location: 1130728-1131088 bp Num of repeats: 6 Spacers: s58-s62 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244752-245310 bp]: array | spacers
           [Locus range 488390-489141 bp]: array | spacers
           [Locus range 685585-687993 bp]: array | spacers
           [Locus range 845560-845722 bp]: array | spacers
           [Locus range 1130728-1131088 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURQ01000002.1 Clostridioides difficile strain VRECD0062 genome assembly, contig: ERS716952SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 702451 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99892-103308 bp 2 Locus 2: 193057-193283 bp 3 Locus 3: 303578-303998 bp 4 Locus 4: 512141-512367 bp Zoom in on locus 1 x13 x5 Zoom in on locus 2 x4 Zoom in on locus 3 x7 Zoom in on locus 4 x4 CRISPR array Location: 99892-100714 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 99892-100714 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 103018-103308 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 103018-103308 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 193057-193283 bp Num of repeats: 4 Spacers: s17-s19 CRISPR array Location: 193057-193283 bp Num of repeats: 4 Spacers: s17-s19 CRISPR array Location: 303578-303998 bp Num of repeats: 7 Spacers: s20-s25 CRISPR array Location: 303578-303998 bp Num of repeats: 7 Spacers: s20-s25 CRISPR array Location: 512141-512367 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 512141-512367 bp Num of repeats: 4 Spacers: s26-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 99892-100714 bp]: array | spacers
           [Locus range 103018-103308 bp]: array | spacers
           [Locus range 193057-193283 bp]: array | spacers
           [Locus range 303578-303998 bp]: array | spacers
           [Locus range 512141-512367 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)