CRISPRone

CRISPRone report for GCA_900165745.1_16852_2_61

♦ Seq 1: FURT01000001.1 Clostridioides difficile strain VRECD0065 genome assembly, contig: ERS716954SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1193564 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244752-245310 bp 2 Locus 2: 318557-326422 bp 3 Locus 3: 488390-489141 bp 4 Locus 4: 678778-690240 bp 5 Locus 5: 845695-845857 bp 6 Locus 6: 1154850-1155210 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x37 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 244752-245310 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244752-245310 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318557-319666 bp Gene: pfam01881:cas6 Type: other Location: 319924-320661 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320666-322141 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322161-323174 bp Gene: cd09693:cas5 Type: Type-I Location: 323190-323987 bp Gene: cd09641:cas3HD Type: Type-I Location: 324014-326422 bp CRISPR array Location: 488390-489141 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 488390-489141 bp Num of repeats: 12 Spacers: s9-s19 Gene: cd09652:cas6 Type: other Location: 678778-679473 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 679485-681224 bp Gene: pfam05107:cas7b Type: Type-I Location: 681217-682206 bp Gene: cd09693:cas5 Type: Type-I Location: 682208-682948 bp Gene: cd09641:cas3HD Type: Type-I Location: 682972-685530 bp CRISPR array Location: 685720-688128 bp Num of repeats: 37 Spacers: s20-s55 CRISPR array Location: 685720-688128 bp Num of repeats: 37 Spacers: s20-s55 Gene: pfam01930:cas4 Type: Type-I Location: 688212-688706 bp Gene: cd09722:cas1 Type: universal Location: 688732-689739 bp Gene: cd09725:cas2 Type: universal Location: 689950-690240 bp CRISPR array Location: 845695-845857 bp Num of repeats: 3 Spacers: s56-s57 CRISPR array Location: 845695-845857 bp Num of repeats: 3 Spacers: s56-s57 CRISPR array Location: 1154850-1155210 bp Num of repeats: 6 Spacers: s58-s62 CRISPR array Location: 1154850-1155210 bp Num of repeats: 6 Spacers: s58-s62 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244752-245310 bp]: array | spacers
           [Locus range 488390-489141 bp]: array | spacers
           [Locus range 685720-688128 bp]: array | spacers
           [Locus range 845695-845857 bp]: array | spacers
           [Locus range 1154850-1155210 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURT01000002.1 Clostridioides difficile strain VRECD0065 genome assembly, contig: ERS716954SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 702722 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190262-190489 bp 2 Locus 2: 398631-399052 bp 3 Locus 3: 509346-509573 bp 4 Locus 4: 599321-602738 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 Zoom in on locus 3 x4 Zoom in on locus 4 x5 x13 CRISPR array Location: 190262-190489 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 190262-190489 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 398631-399052 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 398631-399052 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 509346-509573 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 509346-509573 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 599321-599612 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 599321-599612 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 601915-602738 bp Num of repeats: 13 Spacers: s17-s28 CRISPR array Location: 601915-602738 bp Num of repeats: 13 Spacers: s17-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190262-190489 bp]: array | spacers
           [Locus range 398631-399052 bp]: array | spacers
           [Locus range 509346-509573 bp]: array | spacers
           [Locus range 599321-599612 bp]: array | spacers
           [Locus range 601915-602738 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)