CRISPRone

CRISPRone report for GCA_900165765.1_16852_2_63

♦ Seq 1: FURV01000001.1 Clostridioides difficile strain VRECD0071 genome assembly, contig: ERS716956SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1372102 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208786-209142 bp 2 Locus 2: 282408-290273 bp 3 Locus 3: 452365-453253 bp 4 Locus 4: 751420-752694 bp 5 Locus 5: 1186522-1188062 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x14 Zoom in on locus 4 x20 Zoom in on locus 5 x24 CRISPR array Location: 208786-209142 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 208786-209142 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 282408-283517 bp Gene: pfam01881:cas6 Type: other Location: 283775-284512 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 284517-285992 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 286012-287025 bp Gene: cd09693:cas5 Type: Type-I Location: 287041-287838 bp Gene: cd09641:cas3HD Type: Type-I Location: 287865-290273 bp CRISPR array Location: 452365-453253 bp Num of repeats: 14 Spacers: s6-s18 CRISPR array Location: 452365-453253 bp Num of repeats: 14 Spacers: s6-s18 CRISPR array Location: 751420-752694 bp Num of repeats: 20 Spacers: s19-s37 CRISPR array Location: 751420-752694 bp Num of repeats: 20 Spacers: s19-s37 CRISPR array Location: 1186522-1188062 bp Num of repeats: 24 Spacers: s38-s60 CRISPR array Location: 1186522-1188062 bp Num of repeats: 24 Spacers: s38-s60 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 208786-209142 bp]: array | spacers
           [Locus range 452365-453253 bp]: array | spacers
           [Locus range 751420-752694 bp]: array | spacers
           [Locus range 1186522-1188062 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURV01000004.1 Clostridioides difficile strain VRECD0071 genome assembly, contig: ERS716956SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 339658 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 281399-281891 bp Zoom in on locus 1 x8 CRISPR array Location: 281399-281891 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 281399-281891 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 281399-281891 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURV01000006.1 Clostridioides difficile strain VRECD0071 genome assembly, contig: ERS716956SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 212785 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90949-91375 bp Zoom in on locus 1 x7 CRISPR array Location: 90949-91375 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 90949-91375 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90949-91375 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FURV01000021.1 Clostridioides difficile strain VRECD0071 genome assembly, contig: ERS716956SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 9734 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3343-8677 bp Zoom in on locus 1 x4 x13 x4 CRISPR array Location: 3343-3567 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3343-3567 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 7030-7849 bp Num of repeats: 13 Spacers: s4-s15 CRISPR array Location: 7030-7849 bp Num of repeats: 13 Spacers: s4-s15 CRISPR array Location: 8452-8677 bp Num of repeats: 4 Spacers: s16-s18 CRISPR array Location: 8452-8677 bp Num of repeats: 4 Spacers: s16-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3343-3567 bp]: array | spacers
           [Locus range 7030-7849 bp]: array | spacers
           [Locus range 8452-8677 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FURV01000017.1 Clostridioides difficile strain VRECD0071 genome assembly, contig: ERS716956SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 28199 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24887-25114 bp Zoom in on locus 1 x4 CRISPR array Location: 24887-25114 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 24887-25114 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24887-25114 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)