CRISPRone

CRISPRone report for GCA_900165785.1_16852_2_76

♦ Seq 1: FURY01000001.1 Clostridioides difficile strain VRECD0091 genome assembly, contig: ERS716969SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1742768 bp; # of CRISPR array = 5; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 195435-195530 bp 2 Locus 2: 408148-408309 bp 3 Locus 3: 517568-518188 bp 4 Locus 4: 720290-720710 bp 5 Locus 5: 1492766-1503724 bp 6 Locus 6: 1554934-1564657 bp 7 Locus 7: 1644444-1644800 bp Zoom in on locus 1 x2 Zoom in on locus 2 x3 Zoom in on locus 3 x10 Zoom in on locus 4 x7 Zoom in on locus 5 Zoom in on locus 6 Zoom in on locus 7 x6 CRISPR array Location: 195435-195530 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 195435-195530 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 408148-408309 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 408148-408309 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 517568-518188 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 517568-518188 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 720290-720710 bp Num of repeats: 7 Spacers: s13-s18 CRISPR array Location: 720290-720710 bp Num of repeats: 7 Spacers: s13-s18 Gene: cd06127:DEDDh Type: Type-I Location: 1492766-1493272 bp Gene: unk Type: unknown Location: 1493431-1494099 bp Gene: unk Type: unknown Location: 1494512-1495018 bp Gene: cd06127:DEDDh Type: Type-I Location: 1495390-1496427 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 1503239-1503724 bp Gene: cd09641:cas3HD Type: Type-I Location: 1554934-1557342 bp Gene: cd09693:cas5 Type: Type-I Location: 1557369-1558166 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1558182-1559195 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1559215-1560681 bp Gene: pfam01881:cas6 Type: other Location: 1560686-1561423 bp Gene: unk Type: unknown Location: 1561737-1562195 bp Gene: cas14:cas14 Type: Type-V Location: 1562223-1563395 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1563548-1564657 bp CRISPR array Location: 1644444-1644800 bp Num of repeats: 6 Spacers: s19-s23 CRISPR array Location: 1644444-1644800 bp Num of repeats: 6 Spacers: s19-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 195435-195530 bp]: array | spacers
           [Locus range 408148-408309 bp]: array | spacers
           [Locus range 517568-518188 bp]: array | spacers
           [Locus range 720290-720710 bp]: array | spacers
           [Locus range 1644444-1644800 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)