CRISPRone

CRISPRone report for GCA_900165795.1_16852_2_77

♦ Seq 1: FURX01000001.1 Clostridioides difficile strain VRECD0093 genome assembly, contig: ERS716970SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1035782 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244814-245172 bp 2 Locus 2: 318454-326775 bp 3 Locus 3: 490047-490664 bp 4 Locus 4: 871531-871692 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 Zoom in on locus 4 x3 CRISPR array Location: 244814-245172 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 244814-245172 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318454-319563 bp Gene: unk Type: unknown Location: 319997-320173 bp Gene: pfam01881:cas6 Type: other Location: 320274-321011 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321016-322491 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322511-323527 bp Gene: cd09693:cas5 Type: Type-I Location: 323543-324340 bp Gene: cd09641:cas3HD Type: Type-I Location: 324367-326775 bp CRISPR array Location: 490047-490664 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 490047-490664 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 871531-871692 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 871531-871692 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244814-245172 bp]: array | spacers
           [Locus range 490047-490664 bp]: array | spacers
           [Locus range 871531-871692 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURX01000002.1 Clostridioides difficile strain VRECD0093 genome assembly, contig: ERS716970SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 800153 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64291-65441 bp 2 Locus 2: 242017-242773 bp 3 Locus 3: 353095-353653 bp 4 Locus 4: 708768-713325 bp Zoom in on locus 1 x18 Zoom in on locus 2 x12 Zoom in on locus 3 x9 Zoom in on locus 4 x8 x4 x5 CRISPR array Location: 64291-65441 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 64291-65441 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 242017-242773 bp Num of repeats: 12 Spacers: s18-s28 CRISPR array Location: 242017-242773 bp Num of repeats: 12 Spacers: s18-s28 CRISPR array Location: 353095-353653 bp Num of repeats: 9 Spacers: s29-s36 CRISPR array Location: 353095-353653 bp Num of repeats: 9 Spacers: s29-s36 CRISPR array Location: 708768-709262 bp Num of repeats: 8 Spacers: s37-s43 CRISPR array Location: 708768-709262 bp Num of repeats: 8 Spacers: s37-s43 CRISPR array Location: 711125-711350 bp Num of repeats: 4 Spacers: s44-s46 CRISPR array Location: 711125-711350 bp Num of repeats: 4 Spacers: s44-s46 CRISPR array Location: 713034-713325 bp Num of repeats: 5 Spacers: s47-s50 CRISPR array Location: 713034-713325 bp Num of repeats: 5 Spacers: s47-s50 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 64291-65441 bp]: array | spacers
           [Locus range 242017-242773 bp]: array | spacers
           [Locus range 353095-353653 bp]: array | spacers
           [Locus range 708768-709262 bp]: array | spacers
           [Locus range 711125-711350 bp]: array | spacers
           [Locus range 713034-713325 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FURX01000004.1 Clostridioides difficile strain VRECD0093 genome assembly, contig: ERS716970SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 531089 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44817-44911 bp 2 Locus 2: 267177-278288 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 44817-44911 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44817-44911 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267177-268064 bp Gene: pfam01881:cas6 Type: other Location: 268142-268879 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268885-270735 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270737-271651 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271653-272354 bp Gene: COG1203:cas3 Type: Type-I Location: 272365-274686 bp Gene: pfam01930:cas4 Type: Type-I Location: 274701-275252 bp Gene: cd09722:cas1 Type: universal Location: 275255-276235 bp Gene: cd09725:cas2 Type: universal Location: 276238-276504 bp CRISPR array Location: 276688-278288 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 276688-278288 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44817-44911 bp]: array | spacers
           [Locus range 276688-278288 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)