CRISPRone

CRISPRone report for GCA_900165805.1_16852_2_78

♦ Seq 1: FURZ01000002.1 Clostridioides difficile strain VRECD0094 genome assembly, contig: ERS716971SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 645268 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 136319-136545 bp 2 Locus 2: 246840-247260 bp 3 Locus 3: 455403-455695 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 Zoom in on locus 3 x5 CRISPR array Location: 136319-136545 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 136319-136545 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246840-247260 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 246840-247260 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 455403-455695 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 455403-455695 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 136319-136545 bp]: array | spacers
           [Locus range 246840-247260 bp]: array | spacers
           [Locus range 455403-455695 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FURZ01000001.1 Clostridioides difficile strain VRECD0094 genome assembly, contig: ERS716971SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1207881 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38255-38616 bp 2 Locus 2: 332502-332663 bp 3 Locus 3: 488118-500174 bp 4 Locus 4: 689677-690427 bp 5 Locus 5: 852395-860260 bp 6 Locus 6: 933508-934065 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x46 Zoom in on locus 4 x12 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38255-38616 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38255-38616 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 332502-332663 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 332502-332663 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 488118-488408 bp Gene: cd09722:cas1 Type: universal Location: 488619-489626 bp Gene: pfam01930:cas4 Type: Type-I Location: 489652-490146 bp CRISPR array Location: 490231-493232 bp Num of repeats: 46 Spacers: s8-s52 CRISPR array Location: 490231-493232 bp Num of repeats: 46 Spacers: s8-s52 Gene: cd09641:cas3HD Type: Type-I Location: 493422-495980 bp Gene: cd09693:cas5 Type: Type-I Location: 496004-496744 bp Gene: pfam05107:cas7b Type: Type-I Location: 496746-497735 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 497728-499467 bp Gene: cd09652:cas6 Type: other Location: 499479-500174 bp CRISPR array Location: 689677-690427 bp Num of repeats: 12 Spacers: s53-s63 CRISPR array Location: 689677-690427 bp Num of repeats: 12 Spacers: s53-s63 Gene: cd09641:cas3HD Type: Type-I Location: 852395-854803 bp Gene: cd09693:cas5 Type: Type-I Location: 854830-855627 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 855643-856656 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 856676-858151 bp Gene: pfam01881:cas6 Type: other Location: 858156-858893 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 859151-860260 bp CRISPR array Location: 933508-934065 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 933508-934065 bp Num of repeats: 9 Spacers: s64-s71 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38255-38616 bp]: array | spacers
           [Locus range 332502-332663 bp]: array | spacers
           [Locus range 490231-493232 bp]: array | spacers
           [Locus range 689677-690427 bp]: array | spacers
           [Locus range 933508-934065 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)