CRISPRone

CRISPRone report for GCA_900165815.1_16852_2_79

♦ Seq 1: FUSA01000002.1 Clostridioides difficile strain VRECD0096 genome assembly, contig: ERS716972SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 638991 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 268609-269495 bp 2 Locus 2: 431476-439822 bp 3 Locus 3: 513105-513662 bp Zoom in on locus 1 x14 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 268609-269495 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 268609-269495 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09641:cas3HD Type: Type-I Location: 431476-433884 bp Gene: cd09693:cas5 Type: Type-I Location: 433911-434708 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 434724-435740 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 435760-437235 bp Gene: pfam01881:cas6 Type: other Location: 437240-437977 bp Gene: unk Type: unknown Location: 438078-438254 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 438713-439822 bp CRISPR array Location: 513105-513662 bp Num of repeats: 9 Spacers: s14-s21 CRISPR array Location: 513105-513662 bp Num of repeats: 9 Spacers: s14-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 268609-269495 bp]: array | spacers
           [Locus range 513105-513662 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSA01000001.1 Clostridioides difficile strain VRECD0096 genome assembly, contig: ERS716972SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 858777 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190326-191210 bp 2 Locus 2: 400765-401524 bp 3 Locus 3: 511849-512405 bp 4 Locus 4: 691192-692275 bp Zoom in on locus 1 x14 Zoom in on locus 2 x12 Zoom in on locus 3 x9 Zoom in on locus 4 x17 CRISPR array Location: 190326-191210 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 190326-191210 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 400765-401524 bp Num of repeats: 12 Spacers: s14-s24 CRISPR array Location: 400765-401524 bp Num of repeats: 12 Spacers: s14-s24 CRISPR array Location: 511849-512405 bp Num of repeats: 9 Spacers: s25-s32 CRISPR array Location: 511849-512405 bp Num of repeats: 9 Spacers: s25-s32 CRISPR array Location: 691192-692275 bp Num of repeats: 17 Spacers: s33-s48 CRISPR array Location: 691192-692275 bp Num of repeats: 17 Spacers: s33-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190326-191210 bp]: array | spacers
           [Locus range 400765-401524 bp]: array | spacers
           [Locus range 511849-512405 bp]: array | spacers
           [Locus range 691192-692275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSA01000005.1 Clostridioides difficile strain VRECD0096 genome assembly, contig: ERS716972SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 302366 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196903-197063 bp Zoom in on locus 1 x3 CRISPR array Location: 196903-197063 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 196903-197063 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 196903-197063 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSA01000003.1 Clostridioides difficile strain VRECD0096 genome assembly, contig: ERS716972SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 547937 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19758-19852 bp 2 Locus 2: 234480-245361 bp Zoom in on locus 1 x2 Zoom in on locus 2 x21 CRISPR array Location: 19758-19852 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 19758-19852 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 234480-235367 bp Gene: pfam01881:cas6 Type: other Location: 235445-236182 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 236188-238065 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 238067-238981 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 238983-239684 bp Gene: COG1203:cas3 Type: Type-I Location: 239695-242016 bp Gene: pfam01930:cas4 Type: Type-I Location: 242031-242582 bp Gene: cd09722:cas1 Type: universal Location: 242585-243565 bp Gene: cd09725:cas2 Type: universal Location: 243568-243834 bp CRISPR array Location: 244018-245361 bp Num of repeats: 21 Spacers: s2-s21 CRISPR array Location: 244018-245361 bp Num of repeats: 21 Spacers: s2-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19758-19852 bp]: array | spacers
           [Locus range 244018-245361 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)