CRISPRone

CRISPRone report for GCA_900165825.1_16852_2_80

♦ Seq 1: FUSC01000002.1 Clostridioides difficile strain VRECD0097 genome assembly, contig: ERS716973SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 738146 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 251926-252020 bp 2 Locus 2: 474426-485340 bp Zoom in on locus 1 x2 Zoom in on locus 2 x22 CRISPR array Location: 251926-252020 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 251926-252020 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 474426-475313 bp Gene: pfam01881:cas6 Type: other Location: 475391-476128 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 476134-477984 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 477986-478900 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 478902-479603 bp Gene: COG1203:cas3 Type: Type-I Location: 479614-481935 bp Gene: pfam01930:cas4 Type: Type-I Location: 481950-482501 bp Gene: cd09722:cas1 Type: universal Location: 482504-483484 bp Gene: cd09725:cas2 Type: universal Location: 483487-483753 bp CRISPR array Location: 483937-485340 bp Num of repeats: 22 Spacers: s2-s22 CRISPR array Location: 483937-485340 bp Num of repeats: 22 Spacers: s2-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 251926-252020 bp]: array | spacers
           [Locus range 483937-485340 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSC01000005.1 Clostridioides difficile strain VRECD0097 genome assembly, contig: ERS716973SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 437110 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 326661-326822 bp Zoom in on locus 1 x3 CRISPR array Location: 326661-326822 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 326661-326822 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 326661-326822 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSC01000004.1 Clostridioides difficile strain VRECD0097 genome assembly, contig: ERS716973SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 578151 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87083-87832 bp 2 Locus 2: 251104-259573 bp 3 Locus 3: 332856-333279 bp Zoom in on locus 1 x12 Zoom in on locus 2 Zoom in on locus 3 x7 CRISPR array Location: 87083-87832 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 87083-87832 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 251104-253512 bp Gene: cd09693:cas5 Type: Type-I Location: 253539-254336 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 254352-255368 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 255388-256863 bp Gene: pfam01881:cas6 Type: other Location: 256868-257605 bp Gene: unk Type: unknown Location: 257706-257882 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 258464-259573 bp CRISPR array Location: 332856-333279 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 332856-333279 bp Num of repeats: 7 Spacers: s12-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 87083-87832 bp]: array | spacers
           [Locus range 332856-333279 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSC01000001.1 Clostridioides difficile strain VRECD0097 genome assembly, contig: ERS716973SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 923085 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227998-229346 bp 2 Locus 2: 406901-407985 bp 3 Locus 3: 518307-519064 bp 4 Locus 4: 731329-732283 bp Zoom in on locus 1 x21 Zoom in on locus 2 x17 Zoom in on locus 3 x12 Zoom in on locus 4 x15 CRISPR array Location: 227998-229346 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 227998-229346 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 406901-407985 bp Num of repeats: 17 Spacers: s21-s36 CRISPR array Location: 406901-407985 bp Num of repeats: 17 Spacers: s21-s36 CRISPR array Location: 518307-519064 bp Num of repeats: 12 Spacers: s37-s47 CRISPR array Location: 518307-519064 bp Num of repeats: 12 Spacers: s37-s47 CRISPR array Location: 731329-732283 bp Num of repeats: 15 Spacers: s48-s61 CRISPR array Location: 731329-732283 bp Num of repeats: 15 Spacers: s48-s61 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 227998-229346 bp]: array | spacers
           [Locus range 406901-407985 bp]: array | spacers
           [Locus range 518307-519064 bp]: array | spacers
           [Locus range 731329-732283 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)