CRISPRone

CRISPRone report for GCA_900165835.1_16852_2_81

♦ Seq 1: FUSB01000010.1 Clostridioides difficile strain VRECD0098 genome assembly, contig: ERS716974SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 107527 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22585-29868 bp Zoom in on locus 1 x17 Gene: cd09693:cas5 Type: Type-I Location: 22585-23232 bp Gene: pfam01881:cas6 Type: other Location: 23223-23987 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 23989-25137 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 25158-26228 bp Gene: COG1203:cas3 Type: Type-I Location: 26239-28221 bp CRISPR array Location: 28788-29868 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 28788-29868 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28788-29868 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSB01000003.1 Clostridioides difficile strain VRECD0098 genome assembly, contig: ERS716974SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 494440 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92164-92519 bp 2 Locus 2: 298124-298743 bp Zoom in on locus 1 x6 Zoom in on locus 2 x10 CRISPR array Location: 92164-92519 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 92164-92519 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 298124-298743 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 298124-298743 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92164-92519 bp]: array | spacers
           [Locus range 298124-298743 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSB01000004.1 Clostridioides difficile strain VRECD0098 genome assembly, contig: ERS716974SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 446202 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256002-267210 bp Zoom in on locus 1 x26 CRISPR array Location: 256002-257672 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 256002-257672 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 257856-258122 bp Gene: cd09722:cas1 Type: universal Location: 258125-259105 bp Gene: pfam01930:cas4 Type: Type-I Location: 259108-259626 bp Gene: COG1203:cas3 Type: Type-I Location: 259674-261995 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 262006-262707 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262709-263623 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263625-265475 bp Gene: pfam01881:cas6 Type: other Location: 265481-266275 bp Gene: pfam13280:WYL Type: other Location: 266296-267210 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256002-257672 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSB01000001.1 Clostridioides difficile strain VRECD0098 genome assembly, contig: ERS716974SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1461807 bp; # of CRISPR array = 8; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18206-18764 bp 2 Locus 2: 109028-110677 bp 3 Locus 3: 257535-259274 bp 4 Locus 4: 574117-574342 bp 5 Locus 5: 620013-621422 bp 6 Locus 6: 917759-918840 bp 7 Locus 7: 1084278-1092143 bp 8 Locus 8: 1165413-1165771 bp Zoom in on locus 1 x9 Zoom in on locus 2 x3 x14 Zoom in on locus 3 x27 Zoom in on locus 4 x4 Zoom in on locus 5 x22 Zoom in on locus 6 x17 Zoom in on locus 7 Zoom in on locus 8 x6 CRISPR array Location: 18206-18764 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 18206-18764 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 109028-109189 bp Num of repeats: 3 Spacers: s9-s10 CRISPR array Location: 109028-109189 bp Num of repeats: 3 Spacers: s9-s10 CRISPR array Location: 109791-110677 bp Num of repeats: 14 Spacers: s11-s23 CRISPR array Location: 109791-110677 bp Num of repeats: 14 Spacers: s11-s23 CRISPR array Location: 257535-259274 bp Num of repeats: 27 Spacers: s24-s49 CRISPR array Location: 257535-259274 bp Num of repeats: 27 Spacers: s24-s49 CRISPR array Location: 574117-574342 bp Num of repeats: 4 Spacers: s50-s52 CRISPR array Location: 574117-574342 bp Num of repeats: 4 Spacers: s50-s52 CRISPR array Location: 620013-621422 bp Num of repeats: 22 Spacers: s53-s73 CRISPR array Location: 620013-621422 bp Num of repeats: 22 Spacers: s53-s73 CRISPR array Location: 917759-918840 bp Num of repeats: 17 Spacers: s74-s89 CRISPR array Location: 917759-918840 bp Num of repeats: 17 Spacers: s74-s89 Gene: cd09641:cas3HD Type: Type-I Location: 1084278-1086686 bp Gene: cd09693:cas5 Type: Type-I Location: 1086713-1087510 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1087526-1088539 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1088559-1090034 bp Gene: pfam01881:cas6 Type: other Location: 1090039-1090776 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1091034-1092143 bp CRISPR array Location: 1165413-1165771 bp Num of repeats: 6 Spacers: s90-s94 CRISPR array Location: 1165413-1165771 bp Num of repeats: 6 Spacers: s90-s94 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 18206-18764 bp]: array | spacers
           [Locus range 109028-109189 bp]: array | spacers
           [Locus range 109791-110677 bp]: array | spacers
           [Locus range 257535-259274 bp]: array | spacers
           [Locus range 574117-574342 bp]: array | spacers
           [Locus range 620013-621422 bp]: array | spacers
           [Locus range 917759-918840 bp]: array | spacers
           [Locus range 1165413-1165771 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)