CRISPRone

CRISPRone report for GCA_900165845.1_16852_2_90

♦ Seq 1: FUSD01000006.1 Clostridioides difficile strain VRECD0107 genome assembly, contig: ERS716983SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 380705 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 281188-281349 bp Zoom in on locus 1 x3 CRISPR array Location: 281188-281349 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 281188-281349 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 281188-281349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSD01000005.1 Clostridioides difficile strain VRECD0107 genome assembly, contig: ERS716983SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 392578 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 146875-148023 bp 2 Locus 2: 299929-300414 bp Zoom in on locus 1 x18 Zoom in on locus 2 x8 CRISPR array Location: 146875-148023 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 146875-148023 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 299929-300414 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 299929-300414 bp Num of repeats: 8 Spacers: s18-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 146875-148023 bp]: array | spacers
           [Locus range 299929-300414 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSD01000003.1 Clostridioides difficile strain VRECD0107 genome assembly, contig: ERS716983SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 563255 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63642-64791 bp 2 Locus 2: 230967-235897 bp 3 Locus 3: 326627-327117 bp 4 Locus 4: 437439-437931 bp Zoom in on locus 1 x18 Zoom in on locus 2 x14 x4 x7 Zoom in on locus 3 x8 Zoom in on locus 4 x8 CRISPR array Location: 63642-64791 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63642-64791 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 230967-231852 bp Num of repeats: 14 Spacers: s18-s30 CRISPR array Location: 230967-231852 bp Num of repeats: 14 Spacers: s18-s30 CRISPR array Location: 233646-233869 bp Num of repeats: 4 Spacers: s31-s33 CRISPR array Location: 233646-233869 bp Num of repeats: 4 Spacers: s31-s33 CRISPR array Location: 235474-235897 bp Num of repeats: 7 Spacers: s34-s39 CRISPR array Location: 235474-235897 bp Num of repeats: 7 Spacers: s34-s39 CRISPR array Location: 326627-327117 bp Num of repeats: 8 Spacers: s40-s46 CRISPR array Location: 326627-327117 bp Num of repeats: 8 Spacers: s40-s46 CRISPR array Location: 437439-437931 bp Num of repeats: 8 Spacers: s47-s53 CRISPR array Location: 437439-437931 bp Num of repeats: 8 Spacers: s47-s53 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63642-64791 bp]: array | spacers
           [Locus range 230967-231852 bp]: array | spacers
           [Locus range 233646-233869 bp]: array | spacers
           [Locus range 235474-235897 bp]: array | spacers
           [Locus range 326627-327117 bp]: array | spacers
           [Locus range 437439-437931 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSD01000004.1 Clostridioides difficile strain VRECD0107 genome assembly, contig: ERS716983SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 507970 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252404-263411 bp 2 Locus 2: 485790-485883 bp Zoom in on locus 1 x23 Zoom in on locus 2 x2 CRISPR array Location: 252404-253873 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 252404-253873 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 254057-254323 bp Gene: cd09722:cas1 Type: universal Location: 254326-255306 bp Gene: pfam01930:cas4 Type: Type-I Location: 255309-255827 bp Gene: COG1203:cas3 Type: Type-I Location: 255875-258196 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258207-258908 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258910-259824 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259826-261676 bp Gene: pfam01881:cas6 Type: other Location: 261682-262476 bp Gene: pfam13280:WYL Type: other Location: 262497-263411 bp CRISPR array Location: 485790-485883 bp Num of repeats: 2 Spacers: s23-s23 CRISPR array Location: 485790-485883 bp Num of repeats: 2 Spacers: s23-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252404-253873 bp]: array | spacers
           [Locus range 485790-485883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUSD01000001.1 Clostridioides difficile strain VRECD0107 genome assembly, contig: ERS716983SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 576280 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85619-86235 bp 2 Locus 2: 249507-257828 bp 3 Locus 3: 331111-331468 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 85619-86235 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 85619-86235 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 249507-251915 bp Gene: cd09693:cas5 Type: Type-I Location: 251942-252739 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 252755-253771 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 253791-255266 bp Gene: pfam01881:cas6 Type: other Location: 255271-256008 bp Gene: unk Type: unknown Location: 256109-256285 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 256719-257828 bp CRISPR array Location: 331111-331468 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 331111-331468 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 85619-86235 bp]: array | spacers
           [Locus range 331111-331468 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)