CRISPRone

CRISPRone report for GCA_900165855.1_16852_2_91

♦ Seq 1: FUSE01000004.1 Clostridioides difficile strain VRECD0108 genome assembly, contig: ERS716984SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 546368 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239022-242438 bp Zoom in on locus 1 x13 x5 CRISPR array Location: 239022-239844 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 239022-239844 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 242148-242438 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 242148-242438 bp Num of repeats: 5 Spacers: s13-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 239022-239844 bp]: array | spacers
           [Locus range 242148-242438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSE01000001.1 Clostridioides difficile strain VRECD0108 genome assembly, contig: ERS716984SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1231998 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67426-67787 bp 2 Locus 2: 385660-385821 bp 3 Locus 3: 541276-553332 bp 4 Locus 4: 742835-743585 bp 5 Locus 5: 905547-913412 bp 6 Locus 6: 986660-987217 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x46 Zoom in on locus 4 x12 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 67426-67787 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 67426-67787 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 385660-385821 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 385660-385821 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 541276-541566 bp Gene: cd09722:cas1 Type: universal Location: 541777-542784 bp Gene: pfam01930:cas4 Type: Type-I Location: 542810-543304 bp CRISPR array Location: 543389-546390 bp Num of repeats: 46 Spacers: s8-s52 CRISPR array Location: 543389-546390 bp Num of repeats: 46 Spacers: s8-s52 Gene: cd09641:cas3HD Type: Type-I Location: 546580-549138 bp Gene: cd09693:cas5 Type: Type-I Location: 549162-549902 bp Gene: pfam05107:cas7b Type: Type-I Location: 549904-550893 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 550886-552625 bp Gene: cd09652:cas6 Type: other Location: 552637-553332 bp CRISPR array Location: 742835-743585 bp Num of repeats: 12 Spacers: s53-s63 CRISPR array Location: 742835-743585 bp Num of repeats: 12 Spacers: s53-s63 Gene: cd09641:cas3HD Type: Type-I Location: 905547-907955 bp Gene: cd09693:cas5 Type: Type-I Location: 907982-908779 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 908795-909808 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 909828-911303 bp Gene: pfam01881:cas6 Type: other Location: 911308-912045 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 912303-913412 bp CRISPR array Location: 986660-987217 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 986660-987217 bp Num of repeats: 9 Spacers: s64-s71 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 67426-67787 bp]: array | spacers
           [Locus range 385660-385821 bp]: array | spacers
           [Locus range 543389-546390 bp]: array | spacers
           [Locus range 742835-743585 bp]: array | spacers
           [Locus range 986660-987217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSE01000003.1 Clostridioides difficile strain VRECD0108 genome assembly, contig: ERS716984SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 645163 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189579-189872 bp 2 Locus 2: 398014-398435 bp 3 Locus 3: 508729-508956 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 Zoom in on locus 3 x4 CRISPR array Location: 189579-189872 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 189579-189872 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 398014-398435 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 398014-398435 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 508729-508956 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 508729-508956 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189579-189872 bp]: array | spacers
           [Locus range 398014-398435 bp]: array | spacers
           [Locus range 508729-508956 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)