CRISPRone

CRISPRone report for GCA_900165865.1_16852_2_92

♦ Seq 1: FUSF01000002.1 Clostridioides difficile strain VRECD0109 genome assembly, contig: ERS716985SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 645959 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189602-189895 bp 2 Locus 2: 398037-398458 bp 3 Locus 3: 508752-508979 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 Zoom in on locus 3 x4 CRISPR array Location: 189602-189895 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 189602-189895 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 398037-398458 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 398037-398458 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 508752-508979 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 508752-508979 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189602-189895 bp]: array | spacers
           [Locus range 398037-398458 bp]: array | spacers
           [Locus range 508752-508979 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSF01000010.1 Clostridioides difficile strain VRECD0109 genome assembly, contig: ERS716985SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 120934 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53162-53522 bp Zoom in on locus 1 x6 CRISPR array Location: 53162-53522 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 53162-53522 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53162-53522 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSF01000004.1 Clostridioides difficile strain VRECD0109 genome assembly, contig: ERS716985SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 546141 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 303812-307229 bp Zoom in on locus 1 x5 x13 CRISPR array Location: 303812-304103 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 303812-304103 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 306406-307229 bp Num of repeats: 13 Spacers: s5-s16 CRISPR array Location: 306406-307229 bp Num of repeats: 13 Spacers: s5-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 303812-304103 bp]: array | spacers
           [Locus range 306406-307229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSF01000001.1 Clostridioides difficile strain VRECD0109 genome assembly, contig: ERS716985SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1102145 bp; # of CRISPR array = 4; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244691-245249 bp 2 Locus 2: 318496-326361 bp 3 Locus 3: 488323-489074 bp 4 Locus 4: 678576-690632 bp 5 Locus 5: 846087-846249 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x12 Zoom in on locus 4 x46 Zoom in on locus 5 x3 CRISPR array Location: 244691-245249 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244691-245249 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318496-319605 bp Gene: pfam01881:cas6 Type: other Location: 319863-320600 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320605-322080 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322100-323113 bp Gene: cd09693:cas5 Type: Type-I Location: 323129-323926 bp Gene: cd09641:cas3HD Type: Type-I Location: 323953-326361 bp CRISPR array Location: 488323-489074 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 488323-489074 bp Num of repeats: 12 Spacers: s9-s19 Gene: cd09652:cas6 Type: other Location: 678576-679271 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 679283-681022 bp Gene: pfam05107:cas7b Type: Type-I Location: 681015-682004 bp Gene: cd09693:cas5 Type: Type-I Location: 682006-682746 bp Gene: cd09641:cas3HD Type: Type-I Location: 682770-685328 bp CRISPR array Location: 685518-688520 bp Num of repeats: 46 Spacers: s20-s64 CRISPR array Location: 685518-688520 bp Num of repeats: 46 Spacers: s20-s64 Gene: pfam01930:cas4 Type: Type-I Location: 688604-689098 bp Gene: cd09722:cas1 Type: universal Location: 689124-690131 bp Gene: cd09725:cas2 Type: universal Location: 690342-690632 bp CRISPR array Location: 846087-846249 bp Num of repeats: 3 Spacers: s65-s66 CRISPR array Location: 846087-846249 bp Num of repeats: 3 Spacers: s65-s66 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244691-245249 bp]: array | spacers
           [Locus range 488323-489074 bp]: array | spacers
           [Locus range 685518-688520 bp]: array | spacers
           [Locus range 846087-846249 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)