CRISPRone

CRISPRone report for GCA_900165885.1_11670_1_66

♦ Seq 1: FUSK01000006.1 Clostridioides difficile strain CD63 genome assembly, contig: ERS368508SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 220689 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90976-91398 bp Zoom in on locus 1 x7 CRISPR array Location: 90976-91398 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 90976-91398 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90976-91398 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSK01000002.1 Clostridioides difficile strain CD63 genome assembly, contig: ERS368508SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 681089 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11931-12289 bp 2 Locus 2: 87208-88159 bp 3 Locus 3: 389464-390284 bp 4 Locus 4: 553661-561970 bp 5 Locus 5: 635250-635343 bp Zoom in on locus 1 x6 Zoom in on locus 2 x15 Zoom in on locus 3 x13 Zoom in on locus 4 Zoom in on locus 5 x2 CRISPR array Location: 11931-12289 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 11931-12289 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 87208-88159 bp Num of repeats: 15 Spacers: s6-s19 CRISPR array Location: 87208-88159 bp Num of repeats: 15 Spacers: s6-s19 CRISPR array Location: 389464-390284 bp Num of repeats: 13 Spacers: s20-s31 CRISPR array Location: 389464-390284 bp Num of repeats: 13 Spacers: s20-s31 Gene: cd09641:cas3HD Type: Type-I Location: 553661-556069 bp Gene: cd09693:cas5 Type: Type-I Location: 556096-556893 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 556909-557922 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 557942-559408 bp Gene: pfam01881:cas6 Type: other Location: 559413-560150 bp Gene: unk Type: unknown Location: 560251-560427 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 560861-561970 bp CRISPR array Location: 635250-635343 bp Num of repeats: 2 Spacers: s32-s32 CRISPR array Location: 635250-635343 bp Num of repeats: 2 Spacers: s32-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11931-12289 bp]: array | spacers
           [Locus range 87208-88159 bp]: array | spacers
           [Locus range 389464-390284 bp]: array | spacers
           [Locus range 635250-635343 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSK01000003.1 Clostridioides difficile strain CD63 genome assembly, contig: ERS368508SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 532439 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252707-262931 bp Zoom in on locus 1 x11 CRISPR array Location: 252707-253393 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 252707-253393 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 253577-253843 bp Gene: cd09722:cas1 Type: universal Location: 253846-254826 bp Gene: pfam01930:cas4 Type: Type-I Location: 254829-255347 bp Gene: COG1203:cas3 Type: Type-I Location: 255395-257716 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257727-258428 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258430-259344 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259346-261196 bp Gene: pfam01881:cas6 Type: other Location: 261202-261996 bp Gene: pfam13280:WYL Type: other Location: 262017-262931 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252707-253393 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSK01000011.1 Clostridioides difficile strain CD63 genome assembly, contig: ERS368508SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 133676 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17781-18405 bp 2 Locus 2: 108184-108345 bp Zoom in on locus 1 x10 Zoom in on locus 2 x3 CRISPR array Location: 17781-18405 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 17781-18405 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 108184-108345 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 108184-108345 bp Num of repeats: 3 Spacers: s10-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17781-18405 bp]: array | spacers
           [Locus range 108184-108345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUSK01000009.1 Clostridioides difficile strain CD63 genome assembly, contig: ERS368508SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 171149 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51056-54679 bp 2 Locus 2: 113195-114600 bp Zoom in on locus 1 Zoom in on locus 2 x22 Gene: cas14:cas14 Type: Type-V Location: 51056-52174 bp Gene: unk Type: unknown Location: 52840-54135 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 54311-54679 bp CRISPR array Location: 113195-114600 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 113195-114600 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113195-114600 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)