CRISPRone

CRISPRone report for GCA_900165895.1_11670_1_27

♦ Seq 1: FUSJ01000008.1 Clostridioides difficile strain CD26 genome assembly, contig: ERS368471SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 221755 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90922-91344 bp Zoom in on locus 1 x7 CRISPR array Location: 90922-91344 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 90922-91344 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90922-91344 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSJ01000002.1 Clostridioides difficile strain CD26 genome assembly, contig: ERS368471SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 681508 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11931-12289 bp 2 Locus 2: 87136-88087 bp 3 Locus 3: 389360-390180 bp 4 Locus 4: 553557-561866 bp 5 Locus 5: 635146-635239 bp Zoom in on locus 1 x6 Zoom in on locus 2 x15 Zoom in on locus 3 x13 Zoom in on locus 4 Zoom in on locus 5 x2 CRISPR array Location: 11931-12289 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 11931-12289 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 87136-88087 bp Num of repeats: 15 Spacers: s6-s19 CRISPR array Location: 87136-88087 bp Num of repeats: 15 Spacers: s6-s19 CRISPR array Location: 389360-390180 bp Num of repeats: 13 Spacers: s20-s31 CRISPR array Location: 389360-390180 bp Num of repeats: 13 Spacers: s20-s31 Gene: cd09641:cas3HD Type: Type-I Location: 553557-555965 bp Gene: cd09693:cas5 Type: Type-I Location: 555992-556789 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 556805-557818 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 557838-559304 bp Gene: pfam01881:cas6 Type: other Location: 559309-560046 bp Gene: unk Type: unknown Location: 560147-560323 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 560757-561866 bp CRISPR array Location: 635146-635239 bp Num of repeats: 2 Spacers: s32-s32 CRISPR array Location: 635146-635239 bp Num of repeats: 2 Spacers: s32-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11931-12289 bp]: array | spacers
           [Locus range 87136-88087 bp]: array | spacers
           [Locus range 389360-390180 bp]: array | spacers
           [Locus range 635146-635239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSJ01000004.1 Clostridioides difficile strain CD26 genome assembly, contig: ERS368471SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 304658 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17764-18388 bp 2 Locus 2: 108167-108328 bp 3 Locus 3: 246639-248044 bp Zoom in on locus 1 x10 Zoom in on locus 2 x3 Zoom in on locus 3 x22 CRISPR array Location: 17764-18388 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 17764-18388 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 108167-108328 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 108167-108328 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 246639-248044 bp Num of repeats: 22 Spacers: s12-s32 CRISPR array Location: 246639-248044 bp Num of repeats: 22 Spacers: s12-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17764-18388 bp]: array | spacers
           [Locus range 108167-108328 bp]: array | spacers
           [Locus range 246639-248044 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSJ01000001.1 Clostridioides difficile strain CD26 genome assembly, contig: ERS368471SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 791717 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252707-262931 bp Zoom in on locus 1 x11 CRISPR array Location: 252707-253393 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 252707-253393 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 253577-253843 bp Gene: cd09722:cas1 Type: universal Location: 253846-254826 bp Gene: pfam01930:cas4 Type: Type-I Location: 254829-255347 bp Gene: COG1203:cas3 Type: Type-I Location: 255395-257716 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257727-258428 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258430-259344 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259346-261196 bp Gene: pfam01881:cas6 Type: other Location: 261202-261996 bp Gene: pfam13280:WYL Type: other Location: 262017-262931 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252707-253393 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)