CRISPRone

CRISPRone report for GCA_900165905.1_11670_1_18

♦ Seq 1: FUSH01000002.1 Clostridioides difficile strain CD17 genome assembly, contig: ERS368462SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 532466 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252701-262925 bp Zoom in on locus 1 x11 CRISPR array Location: 252701-253387 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 252701-253387 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 253571-253837 bp Gene: cd09722:cas1 Type: universal Location: 253840-254820 bp Gene: pfam01930:cas4 Type: Type-I Location: 254823-255341 bp Gene: COG1203:cas3 Type: Type-I Location: 255389-257710 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257721-258422 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258424-259338 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259340-261190 bp Gene: pfam01881:cas6 Type: other Location: 261196-261990 bp Gene: pfam13280:WYL Type: other Location: 262011-262925 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252701-253387 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSH01000013.1 Clostridioides difficile strain CD17 genome assembly, contig: ERS368462SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 134238 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25912-26072 bp 2 Locus 2: 115852-116475 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 CRISPR array Location: 25912-26072 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 25912-26072 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 115852-116475 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 115852-116475 bp Num of repeats: 10 Spacers: s3-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25912-26072 bp]: array | spacers
           [Locus range 115852-116475 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSH01000001.1 Clostridioides difficile strain CD17 genome assembly, contig: ERS368462SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 681126 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45788-45882 bp 2 Locus 2: 119161-127470 bp 3 Locus 3: 290847-291668 bp 4 Locus 4: 592972-593924 bp 5 Locus 5: 668838-669197 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x13 Zoom in on locus 4 x15 Zoom in on locus 5 x6 CRISPR array Location: 45788-45882 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 45788-45882 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 119161-120270 bp Gene: unk Type: unknown Location: 120704-120880 bp Gene: pfam01881:cas6 Type: other Location: 120981-121718 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 121723-123189 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 123209-124222 bp Gene: cd09693:cas5 Type: Type-I Location: 124238-125035 bp Gene: cd09641:cas3HD Type: Type-I Location: 125062-127470 bp CRISPR array Location: 290847-291668 bp Num of repeats: 13 Spacers: s2-s13 CRISPR array Location: 290847-291668 bp Num of repeats: 13 Spacers: s2-s13 CRISPR array Location: 592972-593924 bp Num of repeats: 15 Spacers: s14-s27 CRISPR array Location: 592972-593924 bp Num of repeats: 15 Spacers: s14-s27 CRISPR array Location: 668838-669197 bp Num of repeats: 6 Spacers: s28-s32 CRISPR array Location: 668838-669197 bp Num of repeats: 6 Spacers: s28-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45788-45882 bp]: array | spacers
           [Locus range 290847-291668 bp]: array | spacers
           [Locus range 592972-593924 bp]: array | spacers
           [Locus range 668838-669197 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSH01000008.1 Clostridioides difficile strain CD17 genome assembly, contig: ERS368462SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 220643 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129292-129715 bp Zoom in on locus 1 x7 CRISPR array Location: 129292-129715 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 129292-129715 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 129292-129715 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUSH01000010.1 Clostridioides difficile strain CD17 genome assembly, contig: ERS368462SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 169847 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111793-113198 bp Zoom in on locus 1 x22 CRISPR array Location: 111793-113198 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 111793-113198 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111793-113198 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)