CRISPRone

CRISPRone report for GCA_900165915.1_11670_1_56

♦ Seq 1: FUSL01000001.1 Clostridioides difficile strain CD53 genome assembly, contig: ERS368498SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1239499 bp; # of CRISPR array = 5; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38291-39507 bp 2 Locus 2: 348499-348658 bp 3 Locus 3: 399571-400977 bp 4 Locus 4: 750115-751129 bp 5 Locus 5: 913107-920972 bp 6 Locus 6: 994240-994797 bp Zoom in on locus 1 x19 Zoom in on locus 2 x3 Zoom in on locus 3 x22 Zoom in on locus 4 x16 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 38291-39507 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38291-39507 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 348499-348658 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 348499-348658 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 399571-400977 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 399571-400977 bp Num of repeats: 22 Spacers: s21-s41 CRISPR array Location: 750115-751129 bp Num of repeats: 16 Spacers: s42-s56 CRISPR array Location: 750115-751129 bp Num of repeats: 16 Spacers: s42-s56 Gene: cd09641:cas3HD Type: Type-I Location: 913107-915515 bp Gene: cd09693:cas5 Type: Type-I Location: 915542-916339 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 916355-917368 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 917388-918863 bp Gene: pfam01881:cas6 Type: other Location: 918868-919605 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 919863-920972 bp CRISPR array Location: 994240-994797 bp Num of repeats: 9 Spacers: s57-s64 CRISPR array Location: 994240-994797 bp Num of repeats: 9 Spacers: s57-s64 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38291-39507 bp]: array | spacers
           [Locus range 348499-348658 bp]: array | spacers
           [Locus range 399571-400977 bp]: array | spacers
           [Locus range 750115-751129 bp]: array | spacers
           [Locus range 994240-994797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSL01000003.1 Clostridioides difficile strain CD53 genome assembly, contig: ERS368498SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 646505 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190274-190633 bp 2 Locus 2: 398747-399306 bp 3 Locus 3: 509594-510684 bp Zoom in on locus 1 x6 Zoom in on locus 2 x9 Zoom in on locus 3 x17 CRISPR array Location: 190274-190633 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 190274-190633 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 398747-399306 bp Num of repeats: 9 Spacers: s6-s13 CRISPR array Location: 398747-399306 bp Num of repeats: 9 Spacers: s6-s13 CRISPR array Location: 509594-510684 bp Num of repeats: 17 Spacers: s14-s29 CRISPR array Location: 509594-510684 bp Num of repeats: 17 Spacers: s14-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190274-190633 bp]: array | spacers
           [Locus range 398747-399306 bp]: array | spacers
           [Locus range 509594-510684 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSL01000002.1 Clostridioides difficile strain CD53 genome assembly, contig: ERS368498SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 823366 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 255839-267139 bp Zoom in on locus 1 x27 CRISPR array Location: 255839-257574 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 255839-257574 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 257758-258024 bp Gene: cd09722:cas1 Type: universal Location: 258027-259007 bp Gene: pfam01930:cas4 Type: Type-I Location: 259010-259528 bp Gene: COG1203:cas3 Type: Type-I Location: 259576-261897 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 261908-262609 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262611-263525 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263527-265404 bp Gene: pfam01881:cas6 Type: other Location: 265410-266204 bp Gene: pfam13280:WYL Type: other Location: 266225-267139 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 255839-257574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)