CRISPRone

CRISPRone report for GCA_900165925.1_11670_1_28

♦ Seq 1: FUSI01000009.1 Clostridioides difficile strain CD27 genome assembly, contig: ERS368472SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 217163 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90979-92192 bp Zoom in on locus 1 x19 CRISPR array Location: 90979-92192 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 90979-92192 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90979-92192 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSI01000005.1 Clostridioides difficile strain CD27 genome assembly, contig: ERS368472SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 290702 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45890-46847 bp 2 Locus 2: 120071-128408 bp Zoom in on locus 1 x15 Zoom in on locus 2 CRISPR array Location: 45890-46847 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 45890-46847 bp Num of repeats: 15 Spacers: s1-s14 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 120071-121180 bp Gene: unk Type: unknown Location: 121634-121810 bp Gene: pfam01881:cas6 Type: other Location: 121911-122648 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 122653-124119 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 124138-125151 bp Gene: cd09693:cas5 Type: Type-I Location: 125167-125973 bp Gene: cd09641:cas3HD Type: Type-I Location: 126000-128408 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45890-46847 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSI01000008.1 Clostridioides difficile strain CD27 genome assembly, contig: ERS368472SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 257169 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16452-16946 bp 2 Locus 2: 107755-109076 bp 3 Locus 3: 195368-196255 bp Zoom in on locus 1 x8 Zoom in on locus 2 x5 x7 Zoom in on locus 3 x14 CRISPR array Location: 16452-16946 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 16452-16946 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 107755-108049 bp Num of repeats: 5 Spacers: s8-s11 CRISPR array Location: 107755-108049 bp Num of repeats: 5 Spacers: s8-s11 CRISPR array Location: 108652-109076 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 108652-109076 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 195368-196255 bp Num of repeats: 14 Spacers: s18-s30 CRISPR array Location: 195368-196255 bp Num of repeats: 14 Spacers: s18-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16452-16946 bp]: array | spacers
           [Locus range 107755-108049 bp]: array | spacers
           [Locus range 108652-109076 bp]: array | spacers
           [Locus range 195368-196255 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSI01000004.1 Clostridioides difficile strain CD27 genome assembly, contig: ERS368472SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 300608 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 126014-137291 bp Zoom in on locus 1 x27 CRISPR array Location: 126014-127753 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 126014-127753 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 127937-128203 bp Gene: cd09722:cas1 Type: universal Location: 128206-129186 bp Gene: pfam01930:cas4 Type: Type-I Location: 129189-129707 bp Gene: COG1203:cas3 Type: Type-I Location: 129755-132076 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 132087-132788 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132790-133704 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133706-135556 bp Gene: pfam01881:cas6 Type: other Location: 135562-136356 bp Gene: pfam13280:WYL Type: other Location: 136377-137291 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 126014-127753 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUSI01000001.1 Clostridioides difficile strain CD27 genome assembly, contig: ERS368472SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 488908 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2888-3644 bp 2 Locus 2: 359411-359573 bp Zoom in on locus 1 x12 Zoom in on locus 2 x3 CRISPR array Location: 2888-3644 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 2888-3644 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 359411-359573 bp Num of repeats: 3 Spacers: s12-s13 CRISPR array Location: 359411-359573 bp Num of repeats: 3 Spacers: s12-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2888-3644 bp]: array | spacers
           [Locus range 359411-359573 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)