CRISPRone

CRISPRone report for GCA_900165945.1_11670_1_68

♦ Seq 1: FUSM01000008.1 Clostridioides difficile strain CD65 genome assembly, contig: ERS368510SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 216885 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90949-91507 bp Zoom in on locus 1 x9 CRISPR array Location: 90949-91507 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 90949-91507 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90949-91507 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSM01000001.1 Clostridioides difficile strain CD65 genome assembly, contig: ERS368510SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 532896 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44840-44934 bp 2 Locus 2: 267164-278275 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 44840-44934 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44840-44934 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267164-268051 bp Gene: pfam01881:cas6 Type: other Location: 268129-268866 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268872-270722 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270724-271638 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271640-272341 bp Gene: COG1203:cas3 Type: Type-I Location: 272352-274673 bp Gene: pfam01930:cas4 Type: Type-I Location: 274688-275239 bp Gene: cd09722:cas1 Type: universal Location: 275242-276222 bp Gene: cd09725:cas2 Type: universal Location: 276225-276491 bp CRISPR array Location: 276675-278275 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 276675-278275 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44840-44934 bp]: array | spacers
           [Locus range 276675-278275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSM01000010.1 Clostridioides difficile strain CD65 genome assembly, contig: ERS368510SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 178264 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86294-86454 bp Zoom in on locus 1 x3 CRISPR array Location: 86294-86454 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 86294-86454 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86294-86454 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSM01000017.1 Clostridioides difficile strain CD65 genome assembly, contig: ERS368510SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 68316 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3497-4647 bp Zoom in on locus 1 x18 CRISPR array Location: 3497-4647 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3497-4647 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3497-4647 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUSM01000003.1 Clostridioides difficile strain CD65 genome assembly, contig: ERS368510SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 371268 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81035-81651 bp 2 Locus 2: 244923-253244 bp 3 Locus 3: 326527-326884 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 81035-81651 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 81035-81651 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 244923-247331 bp Gene: cd09693:cas5 Type: Type-I Location: 247358-248155 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 248171-249187 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 249207-250682 bp Gene: pfam01881:cas6 Type: other Location: 250687-251424 bp Gene: unk Type: unknown Location: 251525-251701 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 252135-253244 bp CRISPR array Location: 326527-326884 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 326527-326884 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 81035-81651 bp]: array | spacers
           [Locus range 326527-326884 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUSM01000006.1 Clostridioides difficile strain CD65 genome assembly, contig: ERS368510SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 247554 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132716-137646 bp 2 Locus 2: 228375-229131 bp Zoom in on locus 1 x14 x4 x7 Zoom in on locus 2 x12 CRISPR array Location: 132716-133601 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 132716-133601 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 135395-135618 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 135395-135618 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 137223-137646 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 137223-137646 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 228375-229131 bp Num of repeats: 12 Spacers: s23-s33 CRISPR array Location: 228375-229131 bp Num of repeats: 12 Spacers: s23-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132716-133601 bp]: array | spacers
           [Locus range 135395-135618 bp]: array | spacers
           [Locus range 137223-137646 bp]: array | spacers
           [Locus range 228375-229131 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)