CRISPRone

CRISPRone report for GCA_900165955.1_11670_1_2

♦ Seq 1: FUSN01000004.1 Clostridioides difficile strain CD02 genome assembly, contig: ERS368447SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 299943 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 126014-136562 bp Zoom in on locus 1 x16 CRISPR array Location: 126014-127024 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 126014-127024 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09725:cas2 Type: universal Location: 127208-127474 bp Gene: cd09722:cas1 Type: universal Location: 127477-128457 bp Gene: pfam01930:cas4 Type: Type-I Location: 128460-128978 bp Gene: COG1203:cas3 Type: Type-I Location: 129026-131347 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 131358-132059 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132061-132975 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 132977-134827 bp Gene: pfam01881:cas6 Type: other Location: 134833-135627 bp Gene: pfam13280:WYL Type: other Location: 135648-136562 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 126014-127024 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSN01000012.1 Clostridioides difficile strain CD02 genome assembly, contig: ERS368447SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 148036 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 101605-102495 bp Zoom in on locus 1 x14 CRISPR array Location: 101605-102495 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 101605-102495 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 101605-102495 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSN01000003.1 Clostridioides difficile strain CD02 genome assembly, contig: ERS368447SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 418650 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16452-16946 bp 2 Locus 2: 107599-109053 bp 3 Locus 3: 246579-247467 bp Zoom in on locus 1 x8 Zoom in on locus 2 x7 x7 Zoom in on locus 3 x14 CRISPR array Location: 16452-16946 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 16452-16946 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 107599-108026 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 107599-108026 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 108629-109053 bp Num of repeats: 7 Spacers: s14-s19 CRISPR array Location: 108629-109053 bp Num of repeats: 7 Spacers: s14-s19 CRISPR array Location: 246579-247467 bp Num of repeats: 14 Spacers: s20-s32 CRISPR array Location: 246579-247467 bp Num of repeats: 14 Spacers: s20-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16452-16946 bp]: array | spacers
           [Locus range 107599-108026 bp]: array | spacers
           [Locus range 108629-109053 bp]: array | spacers
           [Locus range 246579-247467 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSN01000008.1 Clostridioides difficile strain CD02 genome assembly, contig: ERS368447SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 217135 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124976-126190 bp Zoom in on locus 1 x19 CRISPR array Location: 124976-126190 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 124976-126190 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124976-126190 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUSN01000001.1 Clostridioides difficile strain CD02 genome assembly, contig: ERS368447SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 690063 bp; # of CRISPR array = 2; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 153323-153484 bp 2 Locus 2: 509252-510007 bp 3 Locus 3: 675507-682004 bp Zoom in on locus 1 x3 Zoom in on locus 2 x12 Zoom in on locus 3 CRISPR array Location: 153323-153484 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 153323-153484 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 509252-510007 bp Num of repeats: 12 Spacers: s3-s13 CRISPR array Location: 509252-510007 bp Num of repeats: 12 Spacers: s3-s13 Gene: cd09641:cas3HD Type: Type-I Location: 675507-677915 bp Gene: cd09693:cas5 Type: Type-I Location: 677942-678748 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 678764-679777 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 679796-681262 bp Gene: pfam01881:cas6 Type: other Location: 681267-682004 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 153323-153484 bp]: array | spacers
           [Locus range 509252-510007 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)