CRISPRone

CRISPRone report for GCA_900165965.1_11670_1_72

♦ Seq 1: FUSP01000018.1 Clostridioides difficile strain CD69 genome assembly, contig: ERS368514SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 14194 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5551-5843 bp Zoom in on locus 1 x5 CRISPR array Location: 5551-5843 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5551-5843 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5551-5843 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSP01000001.1 Clostridioides difficile strain CD69 genome assembly, contig: ERS368514SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1333956 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166081-166442 bp 2 Locus 2: 484303-484464 bp 3 Locus 3: 639980-652036 bp 4 Locus 4: 841539-842289 bp 5 Locus 5: 1004247-1012112 bp 6 Locus 6: 1085360-1085917 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x46 Zoom in on locus 4 x12 Zoom in on locus 5 Zoom in on locus 6 x9 CRISPR array Location: 166081-166442 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 166081-166442 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 484303-484464 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 484303-484464 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 639980-640270 bp Gene: cd09722:cas1 Type: universal Location: 640481-641488 bp Gene: pfam01930:cas4 Type: Type-I Location: 641514-642008 bp CRISPR array Location: 642093-645094 bp Num of repeats: 46 Spacers: s8-s52 CRISPR array Location: 642093-645094 bp Num of repeats: 46 Spacers: s8-s52 Gene: cd09641:cas3HD Type: Type-I Location: 645284-647842 bp Gene: cd09693:cas5 Type: Type-I Location: 647866-648606 bp Gene: pfam05107:cas7b Type: Type-I Location: 648608-649597 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 649590-651329 bp Gene: cd09652:cas6 Type: other Location: 651341-652036 bp CRISPR array Location: 841539-842289 bp Num of repeats: 12 Spacers: s53-s63 CRISPR array Location: 841539-842289 bp Num of repeats: 12 Spacers: s53-s63 Gene: cd09641:cas3HD Type: Type-I Location: 1004247-1006655 bp Gene: cd09693:cas5 Type: Type-I Location: 1006682-1007479 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1007495-1008508 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1008528-1010003 bp Gene: pfam01881:cas6 Type: other Location: 1010008-1010745 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1011003-1012112 bp CRISPR array Location: 1085360-1085917 bp Num of repeats: 9 Spacers: s64-s71 CRISPR array Location: 1085360-1085917 bp Num of repeats: 9 Spacers: s64-s71 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 166081-166442 bp]: array | spacers
           [Locus range 484303-484464 bp]: array | spacers
           [Locus range 642093-645094 bp]: array | spacers
           [Locus range 841539-842289 bp]: array | spacers
           [Locus range 1085360-1085917 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSP01000002.1 Clostridioides difficile strain CD69 genome assembly, contig: ERS368514SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 630581 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135670-135896 bp 2 Locus 2: 246237-246657 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 CRISPR array Location: 135670-135896 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 135670-135896 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246237-246657 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 246237-246657 bp Num of repeats: 7 Spacers: s4-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135670-135896 bp]: array | spacers
           [Locus range 246237-246657 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)