CRISPRone

CRISPRone report for GCA_900165985.1_11670_1_65

♦ Seq 1: FUSR01000014.1 Clostridioides difficile strain CD62 genome assembly, contig: ERS368507SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 49608 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43311-44465 bp Zoom in on locus 1 x18 CRISPR array Location: 43311-44465 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 43311-44465 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43311-44465 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSR01000007.1 Clostridioides difficile strain CD62 genome assembly, contig: ERS368507SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 198113 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18161-18522 bp 2 Locus 2: 97875-98100 bp Zoom in on locus 1 x6 Zoom in on locus 2 x4 CRISPR array Location: 18161-18522 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 18161-18522 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 97875-98100 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 97875-98100 bp Num of repeats: 4 Spacers: s6-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18161-18522 bp]: array | spacers
           [Locus range 97875-98100 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSR01000001.1 Clostridioides difficile strain CD62 genome assembly, contig: ERS368507SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1091856 bp; # of CRISPR array = 2; # of cas gene = 8  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244884-245904 bp 2 Locus 2: 319210-327528 bp 3 Locus 3: 492891-494443 bp 4 Locus 4: 837008-840741 bp Zoom in on locus 1 x16 Zoom in on locus 2 Zoom in on locus 3 x24 Zoom in on locus 4 CRISPR array Location: 244884-245904 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 244884-245904 bp Num of repeats: 16 Spacers: s1-s15 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 319210-320319 bp Gene: unk Type: unknown Location: 320753-320929 bp Gene: pfam01881:cas6 Type: other Location: 321030-321767 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 321772-323247 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 323267-324280 bp Gene: cd09693:cas5 Type: Type-I Location: 324296-325093 bp Gene: cd09641:cas3HD Type: Type-I Location: 325120-327528 bp CRISPR array Location: 492891-494443 bp Num of repeats: 24 Spacers: s16-s38 CRISPR array Location: 492891-494443 bp Num of repeats: 24 Spacers: s16-s38 Gene: cd09718:cas1 Type: universal Location: 837008-838663 bp Gene: unk Type: unknown Location: 838722-839474 bp Gene: unk Type: unknown Location: 839685-839819 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 840526-840741 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244884-245904 bp]: array | spacers
           [Locus range 492891-494443 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSR01000012.1 Clostridioides difficile strain CD62 genome assembly, contig: ERS368507SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 97355 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38188-40732 bp Zoom in on locus 1 x39 CRISPR array Location: 38188-40732 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 38188-40732 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38188-40732 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUSR01000006.1 Clostridioides difficile strain CD62 genome assembly, contig: ERS368507SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 210723 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90934-91755 bp Zoom in on locus 1 x13 CRISPR array Location: 90934-91755 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 90934-91755 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90934-91755 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUSR01000002.1 Clostridioides difficile strain CD62 genome assembly, contig: ERS368507SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 767189 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 290401-297419 bp 2 Locus 2: 496797-508795 bp Zoom in on locus 1 x13 Zoom in on locus 2 x38 Gene: cd09693:cas5 Type: Type-I Location: 290401-291048 bp Gene: pfam01881:cas6 Type: other Location: 291039-291803 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 291805-292953 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 292974-294044 bp Gene: COG1203:cas3 Type: Type-I Location: 294055-296037 bp CRISPR array Location: 296603-297419 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 296603-297419 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam13280:WYL Type: other Location: 496797-497684 bp Gene: pfam01881:cas6 Type: other Location: 497762-498499 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 498505-500382 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 500384-501298 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 501300-502001 bp Gene: cd09641:cas3HD Type: Type-I Location: 502012-504333 bp Gene: pfam01930:cas4 Type: Type-I Location: 504348-504899 bp Gene: cd09722:cas1 Type: universal Location: 504902-505882 bp Gene: cd09725:cas2 Type: universal Location: 505885-506151 bp CRISPR array Location: 506335-508795 bp Num of repeats: 38 Spacers: s13-s49 CRISPR array Location: 506335-508795 bp Num of repeats: 38 Spacers: s13-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 296603-297419 bp]: array | spacers
           [Locus range 506335-508795 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)