CRISPRone

CRISPRone report for GCA_900165995.1_11670_1_1

♦ Seq 1: FUSS01000011.1 Clostridioides difficile strain CD01 genome assembly, contig: ERS368446SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140797 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61743-73396 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61743-62033 bp Gene: cd09722:cas1 Type: universal Location: 62244-63251 bp Gene: pfam01930:cas4 Type: Type-I Location: 63277-63771 bp CRISPR array Location: 63856-66454 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63856-66454 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64479-64607 bp Gene: cd09641:cas3HD Type: Type-I Location: 66644-69202 bp Gene: cd09693:cas5 Type: Type-I Location: 69226-69966 bp Gene: pfam05107:cas7b Type: Type-I Location: 69968-70957 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70950-72689 bp Gene: cd09652:cas6 Type: other Location: 72701-73396 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63856-66454 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSS01000023.1 Clostridioides difficile strain CD01 genome assembly, contig: ERS368446SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 65857 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63055-64256 bp Zoom in on locus 1 x11 x4 CRISPR array Location: 63055-63744 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 63055-63744 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 64031-64256 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 64031-64256 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63055-63744 bp]: array | spacers
           [Locus range 64031-64256 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSS01000002.1 Clostridioides difficile strain CD01 genome assembly, contig: ERS368446SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 293976 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104083-104709 bp Zoom in on locus 1 x10 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104083-104709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSS01000003.1 Clostridioides difficile strain CD01 genome assembly, contig: ERS368446SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258830 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88680-97007 bp 2 Locus 2: 149610-160563 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88680-89789 bp Gene: unk Type: unknown Location: 90242-90418 bp Gene: pfam01881:cas6 Type: other Location: 90519-91256 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91261-92727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92746-93759 bp Gene: cd09693:cas5 Type: Type-I Location: 93775-94572 bp Gene: cd09641:cas3HD Type: Type-I Location: 94599-97007 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149610-150095 bp Gene: cd06127:DEDDh Type: Type-I Location: 156910-157947 bp Gene: unk Type: unknown Location: 158311-158817 bp Gene: unk Type: unknown Location: 159230-159898 bp Gene: cd06127:DEDDh Type: Type-I Location: 160057-160563 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUSS01000009.1 Clostridioides difficile strain CD01 genome assembly, contig: ERS368446SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUSS01000001.1 Clostridioides difficile strain CD01 genome assembly, contig: ERS368446SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 376443 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46079-46893 bp 2 Locus 2: 84430-96741 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 46079-46893 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 46079-46893 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 84430-84807 bp Gene: cd09718:cas1 Type: universal Location: 84819-86474 bp CRISPR array Location: 93876-96741 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 93876-96741 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 46079-46893 bp]: array | spacers
           [Locus range 93876-96741 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)