CRISPRone

CRISPRone report for GCA_900166025.1_11670_1_52

♦ Seq 1: FUSV01000017.1 Clostridioides difficile strain CD49 genome assembly, contig: ERS368494SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 75047 bp; # of CRISPR array = 0; # of cas gene = 4  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59861-67098 bp Zoom in on locus 1 Gene: mkCas0151:cas8b10 Type: Subtype-I-B Location: 59861-60421 bp Gene: COG1332:csm5gr7 Type: Subtype-III-A Location: 60485-61096 bp Gene: unk Type: unknown Location: 61208-62101 bp Gene: unk Type: unknown Location: 62126-62344 bp Gene: pfam00078:RT Type: other Location: 62351-64147 bp Gene: unk Type: unknown Location: 64353-64607 bp Gene: unk Type: unknown Location: 64767-65111 bp Gene: pfam00078:RT Type: other Location: 65233-67098 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSV01000001.1 Clostridioides difficile strain CD49 genome assembly, contig: ERS368494SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 571304 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87108-87202 bp 2 Locus 2: 308481-318863 bp Zoom in on locus 1 x2 Zoom in on locus 2 x13 CRISPR array Location: 87108-87202 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 87108-87202 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 308481-309395 bp Gene: pfam01881:cas6 Type: other Location: 309416-310210 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 310216-312093 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 312095-313009 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 313011-313712 bp Gene: COG1203:cas3 Type: Type-I Location: 313723-316044 bp Gene: pfam01930:cas4 Type: Type-I Location: 316059-316610 bp Gene: cd09722:cas1 Type: universal Location: 316613-317593 bp Gene: cd09725:cas2 Type: universal Location: 317596-317862 bp CRISPR array Location: 318046-318863 bp Num of repeats: 13 Spacers: s2-s13 CRISPR array Location: 318046-318863 bp Num of repeats: 13 Spacers: s2-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 87108-87202 bp]: array | spacers
           [Locus range 318046-318863 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSV01000007.1 Clostridioides difficile strain CD49 genome assembly, contig: ERS368494SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 243725 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40942-42620 bp 2 Locus 2: 224270-225156 bp Zoom in on locus 1 x26 Zoom in on locus 2 x14 CRISPR array Location: 40942-42620 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 40942-42620 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 224270-225156 bp Num of repeats: 14 Spacers: s26-s38 CRISPR array Location: 224270-225156 bp Num of repeats: 14 Spacers: s26-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40942-42620 bp]: array | spacers
           [Locus range 224270-225156 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSV01000006.1 Clostridioides difficile strain CD49 genome assembly, contig: ERS368494SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 245737 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14294-14457 bp Zoom in on locus 1 x3 CRISPR array Location: 14294-14457 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14294-14457 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14294-14457 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUSV01000009.1 Clostridioides difficile strain CD49 genome assembly, contig: ERS368494SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 214819 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91462-91689 bp Zoom in on locus 1 x4 CRISPR array Location: 91462-91689 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 91462-91689 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91462-91689 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUSV01000003.1 Clostridioides difficile strain CD49 genome assembly, contig: ERS368494SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 342725 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97792-105657 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 97792-100200 bp Gene: cd09693:cas5 Type: Type-I Location: 100227-101024 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 101040-102053 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 102073-103548 bp Gene: pfam01881:cas6 Type: other Location: 103553-104290 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 104548-105657 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)