CRISPRone

CRISPRone report for GCA_900166035.1_11670_1_57

♦ Seq 1: FUSY01000017.1 Clostridioides difficile strain CD54 genome assembly, contig: ERS368499SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 14266 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8829-9121 bp Zoom in on locus 1 x5 CRISPR array Location: 8829-9121 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 8829-9121 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8829-9121 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSY01000003.1 Clostridioides difficile strain CD54 genome assembly, contig: ERS368499SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 633620 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135666-135892 bp 2 Locus 2: 246128-246548 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 CRISPR array Location: 135666-135892 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 135666-135892 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246128-246548 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 246128-246548 bp Num of repeats: 7 Spacers: s4-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135666-135892 bp]: array | spacers
           [Locus range 246128-246548 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSY01000001.1 Clostridioides difficile strain CD54 genome assembly, contig: ERS368499SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1240449 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248011-248569 bp 2 Locus 2: 321816-329681 bp 3 Locus 3: 490773-491458 bp 4 Locus 4: 680960-692818 bp 5 Locus 5: 883803-883965 bp 6 Locus 6: 1201836-1202196 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x11 Zoom in on locus 4 x43 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 248011-248569 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 248011-248569 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 321816-322925 bp Gene: pfam01881:cas6 Type: other Location: 323183-323920 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 323925-325400 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 325420-326433 bp Gene: cd09693:cas5 Type: Type-I Location: 326449-327246 bp Gene: cd09641:cas3HD Type: Type-I Location: 327273-329681 bp CRISPR array Location: 490773-491458 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 490773-491458 bp Num of repeats: 11 Spacers: s9-s18 Gene: cd09652:cas6 Type: other Location: 680960-681655 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 681667-683406 bp Gene: pfam05107:cas7b Type: Type-I Location: 683399-684388 bp Gene: cd09693:cas5 Type: Type-I Location: 684390-685130 bp Gene: cd09641:cas3HD Type: Type-I Location: 685154-687712 bp CRISPR array Location: 687902-690706 bp Num of repeats: 43 Spacers: s19-s60 CRISPR array Location: 687902-690706 bp Num of repeats: 43 Spacers: s19-s60 Gene: pfam01930:cas4 Type: Type-I Location: 690790-691284 bp Gene: cd09722:cas1 Type: universal Location: 691310-692317 bp Gene: cd09725:cas2 Type: universal Location: 692528-692818 bp CRISPR array Location: 883803-883965 bp Num of repeats: 3 Spacers: s61-s62 CRISPR array Location: 883803-883965 bp Num of repeats: 3 Spacers: s61-s62 CRISPR array Location: 1201836-1202196 bp Num of repeats: 6 Spacers: s63-s67 CRISPR array Location: 1201836-1202196 bp Num of repeats: 6 Spacers: s63-s67 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248011-248569 bp]: array | spacers
           [Locus range 490773-491458 bp]: array | spacers
           [Locus range 687902-690706 bp]: array | spacers
           [Locus range 883803-883965 bp]: array | spacers
           [Locus range 1201836-1202196 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)