CRISPRone

CRISPRone report for GCA_900166045.1_11670_1_6

♦ Seq 1: FUSW01000002.1 Clostridioides difficile strain CD06 genome assembly, contig: ERS368451SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 434704 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 284425-285178 bp Zoom in on locus 1 x12 CRISPR array Location: 284425-285178 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 284425-285178 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 284425-285178 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSW01000005.1 Clostridioides difficile strain CD06 genome assembly, contig: ERS368451SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 255275 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91817-91978 bp Zoom in on locus 1 x3 CRISPR array Location: 91817-91978 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 91817-91978 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91817-91978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSW01000001.1 Clostridioides difficile strain CD06 genome assembly, contig: ERS368451SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 535274 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257227-268234 bp 2 Locus 2: 490321-490414 bp Zoom in on locus 1 x23 Zoom in on locus 2 x2 CRISPR array Location: 257227-258696 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 257227-258696 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 258880-259146 bp Gene: cd09722:cas1 Type: universal Location: 259149-260129 bp Gene: pfam01930:cas4 Type: Type-I Location: 260132-260650 bp Gene: COG1203:cas3 Type: Type-I Location: 260698-263019 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 263030-263731 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 263733-264647 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 264649-266499 bp Gene: pfam01881:cas6 Type: other Location: 266505-267299 bp Gene: pfam13280:WYL Type: other Location: 267320-268234 bp CRISPR array Location: 490321-490414 bp Num of repeats: 2 Spacers: s23-s23 CRISPR array Location: 490321-490414 bp Num of repeats: 2 Spacers: s23-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257227-258696 bp]: array | spacers
           [Locus range 490321-490414 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSW01000020.1 Clostridioides difficile strain CD06 genome assembly, contig: ERS368451SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 68252 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63714-64797 bp Zoom in on locus 1 x17 CRISPR array Location: 63714-64797 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 63714-64797 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63714-64797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUSW01000028.1 Clostridioides difficile strain CD06 genome assembly, contig: ERS368451SCcontig000028, whole genome shotgun sequence

⇒Summary: seq-len = 8383 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3572-8129 bp Zoom in on locus 1 x8 x4 x5 CRISPR array Location: 3572-4066 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3572-4066 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 5929-6154 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 5929-6154 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 7838-8129 bp Num of repeats: 5 Spacers: s11-s14 CRISPR array Location: 7838-8129 bp Num of repeats: 5 Spacers: s11-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3572-4066 bp]: array | spacers
           [Locus range 5929-6154 bp]: array | spacers
           [Locus range 7838-8129 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUSW01000017.1 Clostridioides difficile strain CD06 genome assembly, contig: ERS368451SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 97915 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19173-19930 bp Zoom in on locus 1 x12 CRISPR array Location: 19173-19930 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 19173-19930 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19173-19930 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUSW01000003.1 Clostridioides difficile strain CD06 genome assembly, contig: ERS368451SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 370806 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80537-81153 bp 2 Locus 2: 244428-252749 bp 3 Locus 3: 326032-326389 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 80537-81153 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 80537-81153 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 244428-246836 bp Gene: cd09693:cas5 Type: Type-I Location: 246863-247660 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247676-248692 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 248712-250187 bp Gene: pfam01881:cas6 Type: other Location: 250192-250929 bp Gene: unk Type: unknown Location: 251030-251206 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 251640-252749 bp CRISPR array Location: 326032-326389 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 326032-326389 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 80537-81153 bp]: array | spacers
           [Locus range 326032-326389 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FUSW01000007.1 Clostridioides difficile strain CD06 genome assembly, contig: ERS368451SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 216150 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124574-125133 bp Zoom in on locus 1 x9 CRISPR array Location: 124574-125133 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124574-125133 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124574-125133 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: FUSW01000024.1 Clostridioides difficile strain CD06 genome assembly, contig: ERS368451SCcontig000024, whole genome shotgun sequence

⇒Summary: seq-len = 17909 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5969-10506 bp Zoom in on locus 1 x6 x4 x9 CRISPR array Location: 5969-6328 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5969-6328 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 7932-8156 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 7932-8156 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 9949-10506 bp Num of repeats: 9 Spacers: s9-s16 CRISPR array Location: 9949-10506 bp Num of repeats: 9 Spacers: s9-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5969-6328 bp]: array | spacers
           [Locus range 7932-8156 bp]: array | spacers
           [Locus range 9949-10506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)