CRISPRone

CRISPRone report for GCA_900166065.1_11670_1_70

♦ Seq 1: FUSZ01000001.1 Clostridioides difficile strain CD67 genome assembly, contig: ERS368512SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 379050 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 218481-229434 bp 2 Locus 2: 282037-290364 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 218481-218987 bp Gene: unk Type: unknown Location: 219146-219814 bp Gene: unk Type: unknown Location: 220227-220733 bp Gene: cd06127:DEDDh Type: Type-I Location: 221097-222134 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 228949-229434 bp Gene: cd09641:cas3HD Type: Type-I Location: 282037-284445 bp Gene: cd09693:cas5 Type: Type-I Location: 284472-285269 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 285285-286298 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 286317-287783 bp Gene: pfam01881:cas6 Type: other Location: 287788-288525 bp Gene: unk Type: unknown Location: 288626-288802 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 289255-290364 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUSZ01000019.1 Clostridioides difficile strain CD67 genome assembly, contig: ERS368512SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 76126 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1686-2835 bp Zoom in on locus 1 x18 CRISPR array Location: 1686-2835 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1686-2835 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1686-2835 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUSZ01000004.1 Clostridioides difficile strain CD67 genome assembly, contig: ERS368512SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 295281 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190587-191214 bp Zoom in on locus 1 x10 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190587-191214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUSZ01000009.1 Clostridioides difficile strain CD67 genome assembly, contig: ERS368512SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125789-137487 bp Zoom in on locus 1 x33 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128094-128360 bp Gene: cd09722:cas1 Type: universal Location: 128363-129343 bp Gene: pfam01930:cas4 Type: Type-I Location: 129346-129864 bp Gene: COG1203:cas3 Type: Type-I Location: 129912-132233 bp Gene: cd09693:cas5 Type: Type-I Location: 132244-132945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132947-133861 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133863-135713 bp Gene: pfam01881:cas6 Type: other Location: 135719-136456 bp Gene: pfam13280:WYL Type: other Location: 136534-137487 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125789-127910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUSZ01000003.1 Clostridioides difficile strain CD67 genome assembly, contig: ERS368512SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 321449 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 242454-254041 bp Zoom in on locus 1 x39 Gene: cd09725:cas2 Type: universal Location: 242454-242744 bp Gene: cd09722:cas1 Type: universal Location: 242955-243962 bp Gene: pfam01930:cas4 Type: Type-I Location: 243988-244482 bp CRISPR array Location: 244567-247099 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 244567-247099 bp Num of repeats: 39 Spacers: s1-s38 Gene: unk Type: unknown Location: 245190-245318 bp Gene: cd09641:cas3HD Type: Type-I Location: 247289-249847 bp Gene: cd09693:cas5 Type: Type-I Location: 249871-250611 bp Gene: pfam05107:cas7b Type: Type-I Location: 250613-251602 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 251595-253334 bp Gene: cd09652:cas6 Type: other Location: 253346-254041 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244567-247099 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUSZ01000002.1 Clostridioides difficile strain CD67 genome assembly, contig: ERS368512SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 341883 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46079-46893 bp 2 Locus 2: 102305-114616 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 46079-46893 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 46079-46893 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 102305-102682 bp Gene: cd09718:cas1 Type: universal Location: 102694-104349 bp CRISPR array Location: 111751-114616 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 111751-114616 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 46079-46893 bp]: array | spacers
           [Locus range 111751-114616 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)