CRISPRone

CRISPRone report for GCA_900166075.1_11670_1_69

♦ Seq 1: FUTA01000001.1 Clostridioides difficile strain CD66 genome assembly, contig: ERS368511SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1142138 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 263970-264858 bp 2 Locus 2: 647770-649321 bp 3 Locus 3: 814684-823002 bp 4 Locus 4: 896282-897301 bp Zoom in on locus 1 x3 x7 Zoom in on locus 2 x24 Zoom in on locus 3 Zoom in on locus 4 x16 CRISPR array Location: 263970-264130 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 263970-264130 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 264440-264858 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 264440-264858 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 647770-649321 bp Num of repeats: 24 Spacers: s9-s31 CRISPR array Location: 647770-649321 bp Num of repeats: 24 Spacers: s9-s31 Gene: cd09641:cas3HD Type: Type-I Location: 814684-817092 bp Gene: cd09693:cas5 Type: Type-I Location: 817119-817916 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 817932-818945 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 818965-820440 bp Gene: pfam01881:cas6 Type: other Location: 820445-821182 bp Gene: unk Type: unknown Location: 821283-821459 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 821893-823002 bp CRISPR array Location: 896282-897301 bp Num of repeats: 16 Spacers: s32-s46 CRISPR array Location: 896282-897301 bp Num of repeats: 16 Spacers: s32-s46 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 263970-264130 bp]: array | spacers
           [Locus range 264440-264858 bp]: array | spacers
           [Locus range 647770-649321 bp]: array | spacers
           [Locus range 896282-897301 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTA01000006.1 Clostridioides difficile strain CD66 genome assembly, contig: ERS368511SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 197789 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99693-99917 bp 2 Locus 2: 179271-179631 bp Zoom in on locus 1 x4 Zoom in on locus 2 x6 CRISPR array Location: 99693-99917 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 99693-99917 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 179271-179631 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 179271-179631 bp Num of repeats: 6 Spacers: s4-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 99693-99917 bp]: array | spacers
           [Locus range 179271-179631 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTA01000013.1 Clostridioides difficile strain CD66 genome assembly, contig: ERS368511SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 97417 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56674-59217 bp Zoom in on locus 1 x39 CRISPR array Location: 56674-59217 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 56674-59217 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56674-59217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTA01000005.1 Clostridioides difficile strain CD66 genome assembly, contig: ERS368511SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 210990 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 119021-119973 bp Zoom in on locus 1 x15 CRISPR array Location: 119021-119973 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 119021-119973 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 119021-119973 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTA01000014.1 Clostridioides difficile strain CD66 genome assembly, contig: ERS368511SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 49624 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43323-44477 bp Zoom in on locus 1 x18 CRISPR array Location: 43323-44477 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 43323-44477 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43323-44477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUTA01000002.1 Clostridioides difficile strain CD66 genome assembly, contig: ERS368511SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 770794 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 262267-274091 bp 2 Locus 2: 473408-480425 bp Zoom in on locus 1 x35 Zoom in on locus 2 x13 CRISPR array Location: 262267-264526 bp Num of repeats: 35 Spacers: s1-s34 CRISPR array Location: 262267-264526 bp Num of repeats: 35 Spacers: s1-s34 Gene: cd09725:cas2 Type: universal Location: 264710-264976 bp Gene: cd09722:cas1 Type: universal Location: 264979-265959 bp Gene: pfam01930:cas4 Type: Type-I Location: 265962-266480 bp Gene: cd09641:cas3HD Type: Type-I Location: 266528-268849 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 268860-269561 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 269563-270477 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 270479-272356 bp Gene: pfam01881:cas6 Type: other Location: 272362-273156 bp Gene: pfam13280:WYL Type: other Location: 273177-274091 bp CRISPR array Location: 473408-474223 bp Num of repeats: 13 Spacers: s35-s46 CRISPR array Location: 473408-474223 bp Num of repeats: 13 Spacers: s35-s46 Gene: COG1203:cas3 Type: Type-I Location: 474789-476771 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 476782-477852 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 477873-479021 bp Gene: pfam01881:cas6 Type: other Location: 479023-479787 bp Gene: cd09693:cas5 Type: Type-I Location: 479778-480425 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 262267-264526 bp]: array | spacers
           [Locus range 473408-474223 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)