CRISPRone

CRISPRone report for GCA_900166115.1_11670_1_48

♦ Seq 1: FUTE01000002.1 Clostridioides difficile strain CD45 genome assembly, contig: ERS368490SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 630130 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135421-135647 bp 2 Locus 2: 245764-246184 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 CRISPR array Location: 135421-135647 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 135421-135647 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 245764-246184 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 245764-246184 bp Num of repeats: 7 Spacers: s4-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135421-135647 bp]: array | spacers
           [Locus range 245764-246184 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTE01000018.1 Clostridioides difficile strain CD45 genome assembly, contig: ERS368490SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 14196 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5144-5371 bp Zoom in on locus 1 x4 CRISPR array Location: 5144-5371 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5144-5371 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5144-5371 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTE01000001.1 Clostridioides difficile strain CD45 genome assembly, contig: ERS368490SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1198439 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 249490-250048 bp 2 Locus 2: 323295-331160 bp 3 Locus 3: 493128-493814 bp 4 Locus 4: 683316-695241 bp 5 Locus 5: 850682-850844 bp 6 Locus 6: 1159873-1160233 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x11 Zoom in on locus 4 x44 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 249490-250048 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 249490-250048 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 323295-324404 bp Gene: pfam01881:cas6 Type: other Location: 324662-325399 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 325404-326879 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 326899-327912 bp Gene: cd09693:cas5 Type: Type-I Location: 327928-328725 bp Gene: cd09641:cas3HD Type: Type-I Location: 328752-331160 bp CRISPR array Location: 493128-493814 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 493128-493814 bp Num of repeats: 11 Spacers: s9-s18 Gene: cd09652:cas6 Type: other Location: 683316-684011 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 684023-685762 bp Gene: pfam05107:cas7b Type: Type-I Location: 685755-686744 bp Gene: cd09693:cas5 Type: Type-I Location: 686746-687486 bp Gene: cd09641:cas3HD Type: Type-I Location: 687510-690068 bp CRISPR array Location: 690258-693129 bp Num of repeats: 44 Spacers: s19-s61 CRISPR array Location: 690258-693129 bp Num of repeats: 44 Spacers: s19-s61 Gene: pfam01930:cas4 Type: Type-I Location: 693213-693707 bp Gene: cd09722:cas1 Type: universal Location: 693733-694740 bp Gene: cd09725:cas2 Type: universal Location: 694951-695241 bp CRISPR array Location: 850682-850844 bp Num of repeats: 3 Spacers: s62-s63 CRISPR array Location: 850682-850844 bp Num of repeats: 3 Spacers: s62-s63 CRISPR array Location: 1159873-1160233 bp Num of repeats: 6 Spacers: s64-s68 CRISPR array Location: 1159873-1160233 bp Num of repeats: 6 Spacers: s64-s68 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 249490-250048 bp]: array | spacers
           [Locus range 493128-493814 bp]: array | spacers
           [Locus range 690258-693129 bp]: array | spacers
           [Locus range 850682-850844 bp]: array | spacers
           [Locus range 1159873-1160233 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)