CRISPRone

CRISPRone report for GCA_900166125.1_11670_1_5

♦ Seq 1: FUTG01000008.1 Clostridioides difficile strain CD05 genome assembly, contig: ERS368450SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 211048 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118397-119221 bp Zoom in on locus 1 x13 CRISPR array Location: 118397-119221 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 118397-119221 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118397-119221 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTG01000020.1 Clostridioides difficile strain CD05 genome assembly, contig: ERS368450SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 29165 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22606-22701 bp Zoom in on locus 1 x2 CRISPR array Location: 22606-22701 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 22606-22701 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22606-22701 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTG01000003.1 Clostridioides difficile strain CD05 genome assembly, contig: ERS368450SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 332565 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18206-19951 bp 2 Locus 2: 131854-132144 bp 3 Locus 3: 267500-268837 bp Zoom in on locus 1 x27 Zoom in on locus 2 x5 Zoom in on locus 3 x21 CRISPR array Location: 18206-19951 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 18206-19951 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 131854-132144 bp Num of repeats: 5 Spacers: s27-s30 CRISPR array Location: 131854-132144 bp Num of repeats: 5 Spacers: s27-s30 CRISPR array Location: 267500-268837 bp Num of repeats: 21 Spacers: s31-s50 CRISPR array Location: 267500-268837 bp Num of repeats: 21 Spacers: s31-s50 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18206-19951 bp]: array | spacers
           [Locus range 131854-132144 bp]: array | spacers
           [Locus range 267500-268837 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTG01000001.1 Clostridioides difficile strain CD05 genome assembly, contig: ERS368450SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1148909 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253290-253580 bp 2 Locus 2: 662952-663634 bp 3 Locus 3: 827064-835410 bp 4 Locus 4: 908760-909322 bp Zoom in on locus 1 x5 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x9 CRISPR array Location: 253290-253580 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 253290-253580 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 662952-663634 bp Num of repeats: 11 Spacers: s5-s14 CRISPR array Location: 662952-663634 bp Num of repeats: 11 Spacers: s5-s14 Gene: cd09641:cas3HD Type: Type-I Location: 827064-829472 bp Gene: cd09693:cas5 Type: Type-I Location: 829499-830296 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 830312-831328 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 831348-832823 bp Gene: pfam01881:cas6 Type: other Location: 832828-833565 bp Gene: unk Type: unknown Location: 833666-833842 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 834301-835410 bp CRISPR array Location: 908760-909322 bp Num of repeats: 9 Spacers: s15-s22 CRISPR array Location: 908760-909322 bp Num of repeats: 9 Spacers: s15-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 253290-253580 bp]: array | spacers
           [Locus range 662952-663634 bp]: array | spacers
           [Locus range 908760-909322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTG01000002.1 Clostridioides difficile strain CD05 genome assembly, contig: ERS368450SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 476432 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 275274-285261 bp Zoom in on locus 1 x7 CRISPR array Location: 275274-275696 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 275274-275696 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09725:cas2 Type: universal Location: 275880-276146 bp Gene: cd09722:cas1 Type: universal Location: 276149-277129 bp Gene: pfam01930:cas4 Type: Type-I Location: 277132-277650 bp Gene: cd09641:cas3HD Type: Type-I Location: 277698-280019 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 280030-280731 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 280733-281647 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 281649-283526 bp Gene: pfam01881:cas6 Type: other Location: 283532-284326 bp Gene: pfam13280:WYL Type: other Location: 284347-285261 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 275274-275696 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)