CRISPRone

CRISPRone report for GCA_900166135.1_11670_1_26

♦ Seq 1: FUTF01000008.1 Clostridioides difficile strain CD25 genome assembly, contig: ERS368470SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 216638 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124574-125067 bp Zoom in on locus 1 x8 CRISPR array Location: 124574-125067 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 124574-125067 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124574-125067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTF01000019.1 Clostridioides difficile strain CD25 genome assembly, contig: ERS368470SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 97735 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17949-18440 bp Zoom in on locus 1 x8 CRISPR array Location: 17949-18440 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 17949-18440 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17949-18440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTF01000020.1 Clostridioides difficile strain CD25 genome assembly, contig: ERS368470SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 68612 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63622-64771 bp Zoom in on locus 1 x18 CRISPR array Location: 63622-64771 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63622-64771 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63622-64771 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTF01000005.1 Clostridioides difficile strain CD25 genome assembly, contig: ERS368470SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 231231 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143989-145138 bp Zoom in on locus 1 x18 CRISPR array Location: 143989-145138 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 143989-145138 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 143989-145138 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTF01000001.1 Clostridioides difficile strain CD25 genome assembly, contig: ERS368470SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 589927 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21123-21217 bp 2 Locus 2: 243526-253787 bp Zoom in on locus 1 x2 Zoom in on locus 2 x12 CRISPR array Location: 21123-21217 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 21123-21217 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 243526-244413 bp Gene: pfam01881:cas6 Type: other Location: 244491-245228 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 245234-247084 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247086-248000 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 248002-248703 bp Gene: COG1203:cas3 Type: Type-I Location: 248714-251035 bp Gene: pfam01930:cas4 Type: Type-I Location: 251050-251601 bp Gene: cd09722:cas1 Type: universal Location: 251604-252584 bp Gene: cd09725:cas2 Type: universal Location: 252587-252853 bp CRISPR array Location: 253037-253787 bp Num of repeats: 12 Spacers: s2-s12 CRISPR array Location: 253037-253787 bp Num of repeats: 12 Spacers: s2-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21123-21217 bp]: array | spacers
           [Locus range 253037-253787 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUTF01000009.1 Clostridioides difficile strain CD25 genome assembly, contig: ERS368470SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 203761 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93341-93502 bp Zoom in on locus 1 x3 CRISPR array Location: 93341-93502 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 93341-93502 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 93341-93502 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUTF01000026.1 Clostridioides difficile strain CD25 genome assembly, contig: ERS368470SCcontig000026, whole genome shotgun sequence

⇒Summary: seq-len = 16908 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6886-11817 bp Zoom in on locus 1 x7 x4 x14 CRISPR array Location: 6886-7310 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 6886-7310 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 8914-9138 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 8914-9138 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 10931-11817 bp Num of repeats: 14 Spacers: s10-s22 CRISPR array Location: 10931-11817 bp Num of repeats: 14 Spacers: s10-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6886-7310 bp]: array | spacers
           [Locus range 8914-9138 bp]: array | spacers
           [Locus range 10931-11817 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FUTF01000002.1 Clostridioides difficile strain CD25 genome assembly, contig: ERS368470SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 373153 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82922-83538 bp 2 Locus 2: 246808-255129 bp 3 Locus 3: 328412-328769 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 82922-83538 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 82922-83538 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 246808-249216 bp Gene: cd09693:cas5 Type: Type-I Location: 249243-250040 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 250056-251072 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 251092-252567 bp Gene: pfam01881:cas6 Type: other Location: 252572-253309 bp Gene: unk Type: unknown Location: 253410-253586 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 254020-255129 bp CRISPR array Location: 328412-328769 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 328412-328769 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 82922-83538 bp]: array | spacers
           [Locus range 328412-328769 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)