CRISPRone

CRISPRone report for GCA_900166165.1_11670_1_40

♦ Seq 1: FUTJ01000006.1 Clostridioides difficile strain CD38 genome assembly, contig: ERS368483SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 216611 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91592-92084 bp Zoom in on locus 1 x8 CRISPR array Location: 91592-92084 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 91592-92084 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91592-92084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTJ01000021.1 Clostridioides difficile strain CD38 genome assembly, contig: ERS368483SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 56944 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 179-602 bp Zoom in on locus 1 x7 CRISPR array Location: 179-602 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 179-602 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 179-602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTJ01000018.1 Clostridioides difficile strain CD38 genome assembly, contig: ERS368483SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 91893 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240-398 bp Zoom in on locus 1 x3 CRISPR array Location: 240-398 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 240-398 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 240-398 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTJ01000003.1 Clostridioides difficile strain CD38 genome assembly, contig: ERS368483SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 370736 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80530-81146 bp 2 Locus 2: 244470-252791 bp 3 Locus 3: 326074-326431 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 80530-81146 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 80530-81146 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 244470-246878 bp Gene: cd09693:cas5 Type: Type-I Location: 246905-247702 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247718-248734 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 248754-250229 bp Gene: pfam01881:cas6 Type: other Location: 250234-250971 bp Gene: unk Type: unknown Location: 251072-251248 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 251682-252791 bp CRISPR array Location: 326074-326431 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 326074-326431 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 80530-81146 bp]: array | spacers
           [Locus range 326074-326431 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTJ01000011.1 Clostridioides difficile strain CD38 genome assembly, contig: ERS368483SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 137066 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132658-135560 bp Zoom in on locus 1 x14 x4 CRISPR array Location: 132658-133543 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 132658-133543 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 135337-135560 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 135337-135560 bp Num of repeats: 4 Spacers: s14-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132658-133543 bp]: array | spacers
           [Locus range 135337-135560 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUTJ01000007.1 Clostridioides difficile strain CD38 genome assembly, contig: ERS368483SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 203762 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93342-93503 bp Zoom in on locus 1 x3 CRISPR array Location: 93342-93503 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 93342-93503 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 93342-93503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUTJ01000020.1 Clostridioides difficile strain CD38 genome assembly, contig: ERS368483SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 68304 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63683-64832 bp Zoom in on locus 1 x18 CRISPR array Location: 63683-64832 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63683-64832 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63683-64832 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FUTJ01000019.1 Clostridioides difficile strain CD38 genome assembly, contig: ERS368483SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 83591 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65153-65643 bp Zoom in on locus 1 x8 CRISPR array Location: 65153-65643 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 65153-65643 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 65153-65643 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: FUTJ01000001.1 Clostridioides difficile strain CD38 genome assembly, contig: ERS368483SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 507029 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252377-263514 bp 2 Locus 2: 485833-485926 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 252377-253976 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252377-253976 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254160-254426 bp Gene: cd09722:cas1 Type: universal Location: 254429-255409 bp Gene: pfam01930:cas4 Type: Type-I Location: 255412-255930 bp Gene: COG1203:cas3 Type: Type-I Location: 255978-258299 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258310-259011 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259013-259927 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259929-261779 bp Gene: pfam01881:cas6 Type: other Location: 261785-262579 bp Gene: pfam13280:WYL Type: other Location: 262600-263514 bp CRISPR array Location: 485833-485926 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 485833-485926 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252377-253976 bp]: array | spacers
           [Locus range 485833-485926 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: FUTJ01000004.1 Clostridioides difficile strain CD38 genome assembly, contig: ERS368483SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 256110 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 168917-170066 bp Zoom in on locus 1 x18 CRISPR array Location: 168917-170066 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 168917-170066 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 168917-170066 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)