CRISPRone

CRISPRone report for GCA_900166195.1_11670_1_36

♦ Seq 1: FUTM01000005.1 Clostridioides difficile strain CD34 genome assembly, contig: ERS368479SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 250418 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18013-18308 bp 2 Locus 2: 192324-193801 bp Zoom in on locus 1 x5 Zoom in on locus 2 x23 CRISPR array Location: 18013-18308 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 18013-18308 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 192324-193801 bp Num of repeats: 23 Spacers: s5-s26 CRISPR array Location: 192324-193801 bp Num of repeats: 23 Spacers: s5-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18013-18308 bp]: array | spacers
           [Locus range 192324-193801 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTM01000008.1 Clostridioides difficile strain CD34 genome assembly, contig: ERS368479SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 206379 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114550-115434 bp Zoom in on locus 1 x14 CRISPR array Location: 114550-115434 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 114550-115434 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 114550-115434 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTM01000016.1 Clostridioides difficile strain CD34 genome assembly, contig: ERS368479SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 30479 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20413-21169 bp Zoom in on locus 1 x12 CRISPR array Location: 20413-21169 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 20413-21169 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20413-21169 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTM01000002.1 Clostridioides difficile strain CD34 genome assembly, contig: ERS368479SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 423379 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 165335-175422 bp Zoom in on locus 1 x9 Gene: pfam13280:WYL Type: other Location: 165335-166222 bp Gene: pfam01881:cas6 Type: other Location: 166300-167037 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 167043-168920 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 168922-169836 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 169838-170539 bp Gene: COG1203:cas3 Type: Type-I Location: 170550-172871 bp Gene: pfam01930:cas4 Type: Type-I Location: 172886-173356 bp Gene: cd09722:cas1 Type: universal Location: 173440-174420 bp Gene: cd09725:cas2 Type: universal Location: 174423-174689 bp CRISPR array Location: 174873-175422 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 174873-175422 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 174873-175422 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTM01000001.1 Clostridioides difficile strain CD34 genome assembly, contig: ERS368479SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1101084 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 608763-609184 bp 2 Locus 2: 774662-782527 bp 3 Locus 3: 855818-856313 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x8 CRISPR array Location: 608763-609184 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 608763-609184 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09641:cas3HD Type: Type-I Location: 774662-777070 bp Gene: cd09693:cas5 Type: Type-I Location: 777097-777894 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 777910-778923 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 778943-780418 bp Gene: pfam01881:cas6 Type: other Location: 780423-781160 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 781418-782527 bp CRISPR array Location: 855818-856313 bp Num of repeats: 8 Spacers: s7-s13 CRISPR array Location: 855818-856313 bp Num of repeats: 8 Spacers: s7-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 608763-609184 bp]: array | spacers
           [Locus range 855818-856313 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)