CRISPRone

CRISPRone report for GCA_900166205.1_11670_1_24

♦ Seq 1: FUTN01000015.1 Clostridioides difficile strain CD23 genome assembly, contig: ERS368468SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 104140 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44805-45889 bp 2 Locus 2: 91612-91971 bp Zoom in on locus 1 x17 Zoom in on locus 2 x6 CRISPR array Location: 44805-45889 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 44805-45889 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 91612-91971 bp Num of repeats: 6 Spacers: s17-s21 CRISPR array Location: 91612-91971 bp Num of repeats: 6 Spacers: s17-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44805-45889 bp]: array | spacers
           [Locus range 91612-91971 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTN01000009.1 Clostridioides difficile strain CD23 genome assembly, contig: ERS368468SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 169987 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112131-113406 bp Zoom in on locus 1 x20 CRISPR array Location: 112131-113406 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 112131-113406 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112131-113406 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTN01000017.1 Clostridioides difficile strain CD23 genome assembly, contig: ERS368468SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 82044 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63202-64281 bp Zoom in on locus 1 x17 CRISPR array Location: 63202-64281 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 63202-64281 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63202-64281 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTN01000002.1 Clostridioides difficile strain CD23 genome assembly, contig: ERS368468SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 548343 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46270-46364 bp 2 Locus 2: 119643-127952 bp 3 Locus 3: 291330-292019 bp Zoom in on locus 1 x2 Zoom in on locus 2 Zoom in on locus 3 x11 CRISPR array Location: 46270-46364 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 46270-46364 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 119643-120752 bp Gene: unk Type: unknown Location: 121186-121362 bp Gene: pfam01881:cas6 Type: other Location: 121463-122200 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 122205-123671 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 123691-124704 bp Gene: cd09693:cas5 Type: Type-I Location: 124720-125517 bp Gene: cd09641:cas3HD Type: Type-I Location: 125544-127952 bp CRISPR array Location: 291330-292019 bp Num of repeats: 11 Spacers: s2-s11 CRISPR array Location: 291330-292019 bp Num of repeats: 11 Spacers: s2-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 46270-46364 bp]: array | spacers
           [Locus range 291330-292019 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTN01000008.1 Clostridioides difficile strain CD23 genome assembly, contig: ERS368468SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 209628 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90925-91483 bp Zoom in on locus 1 x9 CRISPR array Location: 90925-91483 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 90925-91483 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90925-91483 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUTN01000003.1 Clostridioides difficile strain CD23 genome assembly, contig: ERS368468SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 413396 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256111-266335 bp Zoom in on locus 1 x11 CRISPR array Location: 256111-256797 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 256111-256797 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 256981-257247 bp Gene: cd09722:cas1 Type: universal Location: 257250-258230 bp Gene: pfam01930:cas4 Type: Type-I Location: 258233-258751 bp Gene: COG1203:cas3 Type: Type-I Location: 258799-261120 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 261131-261832 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 261834-262748 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 262750-264600 bp Gene: pfam01881:cas6 Type: other Location: 264606-265400 bp Gene: pfam13280:WYL Type: other Location: 265421-266335 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256111-256797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)