CRISPRone

CRISPRone report for GCA_900166215.1_11670_1_55

♦ Seq 1: FUTO01000005.1 Clostridioides difficile strain CD52 genome assembly, contig: ERS368497SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 272233 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86183-86345 bp Zoom in on locus 1 x3 CRISPR array Location: 86183-86345 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 86183-86345 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86183-86345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTO01000007.1 Clostridioides difficile strain CD52 genome assembly, contig: ERS368497SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 210059 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118657-119081 bp Zoom in on locus 1 x7 CRISPR array Location: 118657-119081 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 118657-119081 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118657-119081 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTO01000002.1 Clostridioides difficile strain CD52 genome assembly, contig: ERS368497SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 496213 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 276409-286588 bp Zoom in on locus 1 x10 CRISPR array Location: 276409-277023 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 276409-277023 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 277207-277473 bp Gene: cd09722:cas1 Type: universal Location: 277476-278456 bp Gene: pfam01930:cas4 Type: Type-I Location: 278459-278977 bp Gene: COG1203:cas3 Type: Type-I Location: 279025-281346 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 281357-282058 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 282060-282974 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 282976-284853 bp Gene: pfam01881:cas6 Type: other Location: 284859-285596 bp Gene: pfam13280:WYL Type: other Location: 285674-286588 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 276409-277023 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTO01000001.1 Clostridioides difficile strain CD52 genome assembly, contig: ERS368497SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 630662 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30869-31754 bp 2 Locus 2: 196796-204652 bp 3 Locus 3: 277934-278095 bp Zoom in on locus 1 x14 Zoom in on locus 2 Zoom in on locus 3 x3 CRISPR array Location: 30869-31754 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 30869-31754 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09641:cas3HD Type: Type-I Location: 196796-199204 bp Gene: cd09693:cas5 Type: Type-I Location: 199231-200028 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 200044-201057 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 201077-202543 bp Gene: pfam01881:cas6 Type: other Location: 202548-203285 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 203543-204652 bp CRISPR array Location: 277934-278095 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 277934-278095 bp Num of repeats: 3 Spacers: s14-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 30869-31754 bp]: array | spacers
           [Locus range 277934-278095 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTO01000018.1 Clostridioides difficile strain CD52 genome assembly, contig: ERS368497SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 71981 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47776-49380 bp Zoom in on locus 1 x25 CRISPR array Location: 47776-49380 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 47776-49380 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47776-49380 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUTO01000003.1 Clostridioides difficile strain CD52 genome assembly, contig: ERS368497SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 345200 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72702-72795 bp Zoom in on locus 1 x2 CRISPR array Location: 72702-72795 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 72702-72795 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 72702-72795 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUTO01000004.1 Clostridioides difficile strain CD52 genome assembly, contig: ERS368497SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 288628 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252741-252969 bp Zoom in on locus 1 x4 CRISPR array Location: 252741-252969 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 252741-252969 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 252741-252969 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FUTO01000015.1 Clostridioides difficile strain CD52 genome assembly, contig: ERS368497SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 122162 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15851-16011 bp 2 Locus 2: 102509-103131 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 CRISPR array Location: 15851-16011 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 15851-16011 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 102509-103131 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 102509-103131 bp Num of repeats: 10 Spacers: s3-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15851-16011 bp]: array | spacers
           [Locus range 102509-103131 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: FUTO01000009.1 Clostridioides difficile strain CD52 genome assembly, contig: ERS368497SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 175432 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117361-118773 bp Zoom in on locus 1 x22 CRISPR array Location: 117361-118773 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 117361-118773 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 117361-118773 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)