CRISPRone

CRISPRone report for GCA_900166235.1_11670_1_7

♦ Seq 1: FUTQ01000010.1 Clostridioides difficile strain CD07 genome assembly, contig: ERS368452SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 216704 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124574-125133 bp Zoom in on locus 1 x9 CRISPR array Location: 124574-125133 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124574-125133 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124574-125133 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTQ01000001.1 Clostridioides difficile strain CD07 genome assembly, contig: ERS368452SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 532653 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254452-265589 bp 2 Locus 2: 487746-487839 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 254452-256051 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 254452-256051 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 256235-256501 bp Gene: cd09722:cas1 Type: universal Location: 256504-257484 bp Gene: pfam01930:cas4 Type: Type-I Location: 257487-258005 bp Gene: COG1203:cas3 Type: Type-I Location: 258053-260374 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 260385-261086 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 261088-262002 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 262004-263854 bp Gene: pfam01881:cas6 Type: other Location: 263860-264654 bp Gene: pfam13280:WYL Type: other Location: 264675-265589 bp CRISPR array Location: 487746-487839 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 487746-487839 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254452-256051 bp]: array | spacers
           [Locus range 487746-487839 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTQ01000002.1 Clostridioides difficile strain CD07 genome assembly, contig: ERS368452SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 374495 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84665-85150 bp 2 Locus 2: 248426-256747 bp 3 Locus 3: 330030-330387 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 84665-85150 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 84665-85150 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09641:cas3HD Type: Type-I Location: 248426-250834 bp Gene: cd09693:cas5 Type: Type-I Location: 250861-251658 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 251674-252690 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 252710-254185 bp Gene: pfam01881:cas6 Type: other Location: 254190-254927 bp Gene: unk Type: unknown Location: 255028-255204 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 255638-256747 bp CRISPR array Location: 330030-330387 bp Num of repeats: 6 Spacers: s8-s12 CRISPR array Location: 330030-330387 bp Num of repeats: 6 Spacers: s8-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 84665-85150 bp]: array | spacers
           [Locus range 330030-330387 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTQ01000006.1 Clostridioides difficile strain CD07 genome assembly, contig: ERS368452SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 253860 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110386-110546 bp 2 Locus 2: 131374-131727 bp Zoom in on locus 1 x3 Zoom in on locus 2 x6 CRISPR array Location: 110386-110546 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110386-110546 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 131374-131727 bp Num of repeats: 6 Spacers: s3-s7 CRISPR array Location: 131374-131727 bp Num of repeats: 6 Spacers: s3-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110386-110546 bp]: array | spacers
           [Locus range 131374-131727 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTQ01000007.1 Clostridioides difficile strain CD07 genome assembly, contig: ERS368452SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 246756 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17874-18631 bp 2 Locus 2: 109359-114157 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 x4 x12 CRISPR array Location: 17874-18631 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 17874-18631 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 109359-109783 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 109359-109783 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 111387-111611 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 111387-111611 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 113404-114157 bp Num of repeats: 12 Spacers: s21-s31 CRISPR array Location: 113404-114157 bp Num of repeats: 12 Spacers: s21-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17874-18631 bp]: array | spacers
           [Locus range 109359-109783 bp]: array | spacers
           [Locus range 111387-111611 bp]: array | spacers
           [Locus range 113404-114157 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUTQ01000018.1 Clostridioides difficile strain CD07 genome assembly, contig: ERS368452SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 68243 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63622-64771 bp Zoom in on locus 1 x18 CRISPR array Location: 63622-64771 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63622-64771 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63622-64771 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUTQ01000004.1 Clostridioides difficile strain CD07 genome assembly, contig: ERS368452SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 277222 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86058-87206 bp Zoom in on locus 1 x18 CRISPR array Location: 86058-87206 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 86058-87206 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86058-87206 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)