CRISPRone

CRISPRone report for GCA_900166245.1_11670_1_23

♦ Seq 1: FUTR01000015.1 Clostridioides difficile strain CD22 genome assembly, contig: ERS368467SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 68232 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3456-4606 bp Zoom in on locus 1 x18 CRISPR array Location: 3456-4606 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3456-4606 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3456-4606 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTR01000002.1 Clostridioides difficile strain CD22 genome assembly, contig: ERS368467SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 507419 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252720-263857 bp 2 Locus 2: 486201-486294 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 252720-254319 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252720-254319 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254503-254769 bp Gene: cd09722:cas1 Type: universal Location: 254772-255752 bp Gene: pfam01930:cas4 Type: Type-I Location: 255755-256273 bp Gene: COG1203:cas3 Type: Type-I Location: 256321-258642 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258653-259354 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259356-260270 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260272-262122 bp Gene: pfam01881:cas6 Type: other Location: 262128-262922 bp Gene: pfam13280:WYL Type: other Location: 262943-263857 bp CRISPR array Location: 486201-486294 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 486201-486294 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252720-254319 bp]: array | spacers
           [Locus range 486201-486294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTR01000004.1 Clostridioides difficile strain CD22 genome assembly, contig: ERS368467SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 370743 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44360-44718 bp 2 Locus 2: 118000-126321 bp 3 Locus 3: 289593-290210 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44360-44718 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44360-44718 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118000-119109 bp Gene: unk Type: unknown Location: 119543-119719 bp Gene: pfam01881:cas6 Type: other Location: 119820-120557 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120562-122037 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122057-123073 bp Gene: cd09693:cas5 Type: Type-I Location: 123089-123886 bp Gene: cd09641:cas3HD Type: Type-I Location: 123913-126321 bp CRISPR array Location: 289593-290210 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289593-290210 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44360-44718 bp]: array | spacers
           [Locus range 289593-290210 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTR01000005.1 Clostridioides difficile strain CD22 genome assembly, contig: ERS368467SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 247845 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18986-19743 bp 2 Locus 2: 110462-115129 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 x4 x10 CRISPR array Location: 18986-19743 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18986-19743 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 110462-110886 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 110462-110886 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 112490-112714 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 112490-112714 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 114507-115129 bp Num of repeats: 10 Spacers: s21-s29 CRISPR array Location: 114507-115129 bp Num of repeats: 10 Spacers: s21-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18986-19743 bp]: array | spacers
           [Locus range 110462-110886 bp]: array | spacers
           [Locus range 112490-112714 bp]: array | spacers
           [Locus range 114507-115129 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTR01000007.1 Clostridioides difficile strain CD22 genome assembly, contig: ERS368467SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 216557 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91492-91984 bp Zoom in on locus 1 x8 CRISPR array Location: 91492-91984 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 91492-91984 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91492-91984 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUTR01000009.1 Clostridioides difficile strain CD22 genome assembly, contig: ERS368467SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 202051 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110265-110425 bp Zoom in on locus 1 x3 CRISPR array Location: 110265-110425 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110265-110425 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110265-110425 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUTR01000022.1 Clostridioides difficile strain CD22 genome assembly, contig: ERS368467SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 14624 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4670-5819 bp Zoom in on locus 1 x18 CRISPR array Location: 4670-5819 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 4670-5819 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4670-5819 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FUTR01000016.1 Clostridioides difficile strain CD22 genome assembly, contig: ERS368467SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 57612 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40218-40575 bp Zoom in on locus 1 x6 CRISPR array Location: 40218-40575 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 40218-40575 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40218-40575 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: FUTR01000001.1 Clostridioides difficile strain CD22 genome assembly, contig: ERS368467SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 732534 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87788-87883 bp Zoom in on locus 1 x2 CRISPR array Location: 87788-87883 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 87788-87883 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 87788-87883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)