CRISPRone

CRISPRone report for GCA_900166255.1_11670_1_11

♦ Seq 1: FUTS01000004.1 Clostridioides difficile strain CD10 genome assembly, contig: ERS368455SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 319309 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208891-209052 bp Zoom in on locus 1 x3 CRISPR array Location: 208891-209052 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 208891-209052 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 208891-209052 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTS01000006.1 Clostridioides difficile strain CD10 genome assembly, contig: ERS368455SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 216689 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91625-92117 bp Zoom in on locus 1 x8 CRISPR array Location: 91625-92117 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 91625-92117 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91625-92117 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTS01000020.1 Clostridioides difficile strain CD10 genome assembly, contig: ERS368455SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 90861 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17949-18440 bp Zoom in on locus 1 x8 CRISPR array Location: 17949-18440 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 17949-18440 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17949-18440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTS01000021.1 Clostridioides difficile strain CD10 genome assembly, contig: ERS368455SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 68240 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63619-64768 bp Zoom in on locus 1 x18 CRISPR array Location: 63619-64768 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63619-64768 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63619-64768 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTS01000001.1 Clostridioides difficile strain CD10 genome assembly, contig: ERS368455SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 511818 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21085-21179 bp 2 Locus 2: 243524-254635 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 21085-21179 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 21085-21179 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 243524-244411 bp Gene: pfam01881:cas6 Type: other Location: 244489-245226 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 245232-247082 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247084-247998 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 248000-248701 bp Gene: COG1203:cas3 Type: Type-I Location: 248712-251033 bp Gene: pfam01930:cas4 Type: Type-I Location: 251048-251599 bp Gene: cd09722:cas1 Type: universal Location: 251602-252582 bp Gene: cd09725:cas2 Type: universal Location: 252585-252851 bp CRISPR array Location: 253035-254635 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 253035-254635 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21085-21179 bp]: array | spacers
           [Locus range 253035-254635 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUTS01000002.1 Clostridioides difficile strain CD10 genome assembly, contig: ERS368455SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 370516 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80528-81144 bp 2 Locus 2: 244416-252737 bp 3 Locus 3: 326020-326377 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 80528-81144 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 80528-81144 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 244416-246824 bp Gene: cd09693:cas5 Type: Type-I Location: 246851-247648 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247664-248680 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 248700-250175 bp Gene: pfam01881:cas6 Type: other Location: 250180-250917 bp Gene: unk Type: unknown Location: 251018-251194 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 251628-252737 bp CRISPR array Location: 326020-326377 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 326020-326377 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 80528-81144 bp]: array | spacers
           [Locus range 326020-326377 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUTS01000009.1 Clostridioides difficile strain CD10 genome assembly, contig: ERS368455SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 150653 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132526-137456 bp Zoom in on locus 1 x14 x4 x7 CRISPR array Location: 132526-133411 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 132526-133411 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 135205-135428 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 135205-135428 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 137033-137456 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 137033-137456 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132526-133411 bp]: array | spacers
           [Locus range 135205-135428 bp]: array | spacers
           [Locus range 137033-137456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FUTS01000005.1 Clostridioides difficile strain CD10 genome assembly, contig: ERS368455SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 225665 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86095-87243 bp Zoom in on locus 1 x18 CRISPR array Location: 86095-87243 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 86095-87243 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86095-87243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)