CRISPRone

CRISPRone report for GCA_900166265.1_11670_1_67

♦ Seq 1: FUTT01000003.1 Clostridioides difficile strain CD64 genome assembly, contig: ERS368509SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 419564 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 171194-172081 bp 2 Locus 2: 313695-314189 bp 3 Locus 3: 404954-406275 bp Zoom in on locus 1 x14 Zoom in on locus 2 x8 Zoom in on locus 3 x5 x7 CRISPR array Location: 171194-172081 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 171194-172081 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 313695-314189 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 313695-314189 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 404954-405248 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 404954-405248 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 405851-406275 bp Num of repeats: 7 Spacers: s25-s30 CRISPR array Location: 405851-406275 bp Num of repeats: 7 Spacers: s25-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 171194-172081 bp]: array | spacers
           [Locus range 313695-314189 bp]: array | spacers
           [Locus range 404954-405248 bp]: array | spacers
           [Locus range 405851-406275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTT01000004.1 Clostridioides difficile strain CD64 genome assembly, contig: ERS368509SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 299728 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125120-136397 bp Zoom in on locus 1 x27 CRISPR array Location: 125120-126859 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 125120-126859 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 127043-127309 bp Gene: cd09722:cas1 Type: universal Location: 127312-128292 bp Gene: pfam01930:cas4 Type: Type-I Location: 128295-128813 bp Gene: COG1203:cas3 Type: Type-I Location: 128861-131182 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 131193-131894 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 131896-132810 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 132812-134662 bp Gene: pfam01881:cas6 Type: other Location: 134668-135462 bp Gene: pfam13280:WYL Type: other Location: 135483-136397 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125120-126859 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTT01000008.1 Clostridioides difficile strain CD64 genome assembly, contig: ERS368509SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 217986 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97356-97518 bp Zoom in on locus 1 x3 CRISPR array Location: 97356-97518 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 97356-97518 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97356-97518 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTT01000001.1 Clostridioides difficile strain CD64 genome assembly, contig: ERS368509SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 552755 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 258493-259248 bp 2 Locus 2: 424751-433088 bp 3 Locus 3: 506313-507269 bp Zoom in on locus 1 x12 Zoom in on locus 2 Zoom in on locus 3 x15 CRISPR array Location: 258493-259248 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 258493-259248 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 424751-427159 bp Gene: cd09693:cas5 Type: Type-I Location: 427186-427992 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 428008-429021 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 429040-430506 bp Gene: pfam01881:cas6 Type: other Location: 430511-431248 bp Gene: unk Type: unknown Location: 431349-431525 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 431979-433088 bp CRISPR array Location: 506313-507269 bp Num of repeats: 15 Spacers: s12-s25 CRISPR array Location: 506313-507269 bp Num of repeats: 15 Spacers: s12-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 258493-259248 bp]: array | spacers
           [Locus range 506313-507269 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTT01000009.1 Clostridioides difficile strain CD64 genome assembly, contig: ERS368509SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 217097 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90947-92160 bp Zoom in on locus 1 x19 CRISPR array Location: 90947-92160 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 90947-92160 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90947-92160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUTT01000005.1 Clostridioides difficile strain CD64 genome assembly, contig: ERS368509SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 287836 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140406-144258 bp Zoom in on locus 1 x5 x6 CRISPR array Location: 140406-140697 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 140406-140697 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 143902-144258 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 143902-144258 bp Num of repeats: 6 Spacers: s5-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 140406-140697 bp]: array | spacers
           [Locus range 143902-144258 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)