CRISPRone

CRISPRone report for GCA_900166275.1_11670_1_58

♦ Seq 1: FUTU01000003.1 Clostridioides difficile strain CD55 genome assembly, contig: ERS368500SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 630494 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135666-135892 bp 2 Locus 2: 246211-246631 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 CRISPR array Location: 135666-135892 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 135666-135892 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246211-246631 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 246211-246631 bp Num of repeats: 7 Spacers: s4-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135666-135892 bp]: array | spacers
           [Locus range 246211-246631 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTU01000020.1 Clostridioides difficile strain CD55 genome assembly, contig: ERS368500SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 14200 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8829-9055 bp Zoom in on locus 1 x4 CRISPR array Location: 8829-9055 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 8829-9055 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8829-9055 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTU01000001.1 Clostridioides difficile strain CD55 genome assembly, contig: ERS368500SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1178585 bp; # of CRISPR array = 5; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244678-245236 bp 2 Locus 2: 318483-326348 bp 3 Locus 3: 488316-489002 bp 4 Locus 4: 678504-690429 bp 5 Locus 5: 845856-846018 bp 6 Locus 6: 1139912-1140272 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x11 Zoom in on locus 4 x44 Zoom in on locus 5 x3 Zoom in on locus 6 x6 CRISPR array Location: 244678-245236 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244678-245236 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318483-319592 bp Gene: pfam01881:cas6 Type: other Location: 319850-320587 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320592-322067 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 322087-323100 bp Gene: cd09693:cas5 Type: Type-I Location: 323116-323913 bp Gene: cd09641:cas3HD Type: Type-I Location: 323940-326348 bp CRISPR array Location: 488316-489002 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 488316-489002 bp Num of repeats: 11 Spacers: s9-s18 Gene: cd09652:cas6 Type: other Location: 678504-679199 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 679211-680950 bp Gene: pfam05107:cas7b Type: Type-I Location: 680943-681932 bp Gene: cd09693:cas5 Type: Type-I Location: 681934-682674 bp Gene: cd09641:cas3HD Type: Type-I Location: 682698-685256 bp CRISPR array Location: 685446-688317 bp Num of repeats: 44 Spacers: s19-s61 CRISPR array Location: 685446-688317 bp Num of repeats: 44 Spacers: s19-s61 Gene: pfam01930:cas4 Type: Type-I Location: 688401-688895 bp Gene: cd09722:cas1 Type: universal Location: 688921-689928 bp Gene: cd09725:cas2 Type: universal Location: 690139-690429 bp CRISPR array Location: 845856-846018 bp Num of repeats: 3 Spacers: s62-s63 CRISPR array Location: 845856-846018 bp Num of repeats: 3 Spacers: s62-s63 CRISPR array Location: 1139912-1140272 bp Num of repeats: 6 Spacers: s64-s68 CRISPR array Location: 1139912-1140272 bp Num of repeats: 6 Spacers: s64-s68 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244678-245236 bp]: array | spacers
           [Locus range 488316-489002 bp]: array | spacers
           [Locus range 685446-688317 bp]: array | spacers
           [Locus range 845856-846018 bp]: array | spacers
           [Locus range 1139912-1140272 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)