CRISPRone

CRISPRone report for GCA_900166295.1_11670_1_46

♦ Seq 1: FUTV01000009.1 Clostridioides difficile strain CD43 genome assembly, contig: ERS368488SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125789-137487 bp Zoom in on locus 1 x33 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128094-128360 bp Gene: cd09722:cas1 Type: universal Location: 128363-129343 bp Gene: pfam01930:cas4 Type: Type-I Location: 129346-129864 bp Gene: COG1203:cas3 Type: Type-I Location: 129912-132233 bp Gene: cd09693:cas5 Type: Type-I Location: 132244-132945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132947-133861 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133863-135713 bp Gene: pfam01881:cas6 Type: other Location: 135719-136456 bp Gene: pfam13280:WYL Type: other Location: 136534-137487 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125789-127910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTV01000001.1 Clostridioides difficile strain CD43 genome assembly, contig: ERS368488SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 341688 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45884-46698 bp 2 Locus 2: 102110-114421 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 45884-46698 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 45884-46698 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 102110-102487 bp Gene: cd09718:cas1 Type: universal Location: 102499-104154 bp CRISPR array Location: 111556-114421 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 111556-114421 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45884-46698 bp]: array | spacers
           [Locus range 111556-114421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTV01000011.1 Clostridioides difficile strain CD43 genome assembly, contig: ERS368488SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140736 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67409-78996 bp Zoom in on locus 1 x39 Gene: cd09652:cas6 Type: other Location: 67409-68104 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68116-69855 bp Gene: pfam05107:cas7b Type: Type-I Location: 69848-70837 bp Gene: cd09693:cas5 Type: Type-I Location: 70839-71579 bp Gene: cd09641:cas3HD Type: Type-I Location: 71603-74161 bp CRISPR array Location: 74351-76884 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 74351-76884 bp Num of repeats: 39 Spacers: s1-s38 Gene: pfam01930:cas4 Type: Type-I Location: 76968-77462 bp Gene: cd09722:cas1 Type: universal Location: 77488-78495 bp Gene: cd09725:cas2 Type: universal Location: 78706-78996 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74351-76884 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTV01000003.1 Clostridioides difficile strain CD43 genome assembly, contig: ERS368488SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258507 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97938-108891 bp 2 Locus 2: 161494-169821 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 97938-98444 bp Gene: unk Type: unknown Location: 98603-99271 bp Gene: unk Type: unknown Location: 99684-100190 bp Gene: cd06127:DEDDh Type: Type-I Location: 100554-101591 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108406-108891 bp Gene: cd09641:cas3HD Type: Type-I Location: 161494-163902 bp Gene: cd09693:cas5 Type: Type-I Location: 163929-164726 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 164742-165755 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 165774-167240 bp Gene: pfam01881:cas6 Type: other Location: 167245-167982 bp Gene: unk Type: unknown Location: 168083-168259 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 168712-169821 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTV01000002.1 Clostridioides difficile strain CD43 genome assembly, contig: ERS368488SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295295 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190587-191214 bp Zoom in on locus 1 x10 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190587-191214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUTV01000021.1 Clostridioides difficile strain CD43 genome assembly, contig: ERS368488SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 76062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2751 bp Zoom in on locus 1 x18 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)