CRISPRone

CRISPRone report for GCA_900166315.1_11670_1_21

♦ Seq 1: FUTY01000001.1 Clostridioides difficile strain CD20 genome assembly, contig: ERS368465SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 321860 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45880-46368 bp 2 Locus 2: 83870-94594 bp Zoom in on locus 1 x8 Zoom in on locus 2 x20 CRISPR array Location: 45880-46368 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 45880-46368 bp Num of repeats: 8 Spacers: s1-s7 Gene: COG0640:csa3 Type: Subtype-I-A Location: 83870-84247 bp Gene: cd09718:cas1 Type: universal Location: 84259-85914 bp CRISPR array Location: 93317-94594 bp Num of repeats: 20 Spacers: s8-s26 CRISPR array Location: 93317-94594 bp Num of repeats: 20 Spacers: s8-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45880-46368 bp]: array | spacers
           [Locus range 93317-94594 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUTY01000020.1 Clostridioides difficile strain CD20 genome assembly, contig: ERS368465SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 76456 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-3148 bp Zoom in on locus 1 x24 CRISPR array Location: 1602-3148 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 1602-3148 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-3148 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUTY01000011.1 Clostridioides difficile strain CD20 genome assembly, contig: ERS368465SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 140736 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67410-78998 bp Zoom in on locus 1 x39 Gene: cd09652:cas6 Type: other Location: 67410-68105 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68117-69856 bp Gene: pfam05107:cas7b Type: Type-I Location: 69849-70838 bp Gene: cd09693:cas5 Type: Type-I Location: 70840-71580 bp Gene: cd09641:cas3HD Type: Type-I Location: 71604-74162 bp CRISPR array Location: 74352-76886 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 74352-76886 bp Num of repeats: 39 Spacers: s1-s38 Gene: pfam01930:cas4 Type: Type-I Location: 76970-77464 bp Gene: cd09722:cas1 Type: universal Location: 77490-78497 bp Gene: cd09725:cas2 Type: universal Location: 78708-78998 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74352-76886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUTY01000004.1 Clostridioides difficile strain CD20 genome assembly, contig: ERS368465SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 258396 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88678-97005 bp 2 Locus 2: 149608-160561 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88678-89787 bp Gene: unk Type: unknown Location: 90240-90416 bp Gene: pfam01881:cas6 Type: other Location: 90517-91254 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91259-92725 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92744-93757 bp Gene: cd09693:cas5 Type: Type-I Location: 93773-94570 bp Gene: cd09641:cas3HD Type: Type-I Location: 94597-97005 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149608-150093 bp Gene: cd06127:DEDDh Type: Type-I Location: 156908-157945 bp Gene: unk Type: unknown Location: 158309-158815 bp Gene: unk Type: unknown Location: 159228-159896 bp Gene: cd06127:DEDDh Type: Type-I Location: 160055-160561 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUTY01000009.1 Clostridioides difficile strain CD20 genome assembly, contig: ERS368465SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147776 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9823-21990 bp Zoom in on locus 1 x40 Gene: pfam13280:WYL Type: other Location: 9823-10776 bp Gene: pfam01881:cas6 Type: other Location: 10854-11591 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11597-13447 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13449-14363 bp Gene: cd09693:cas5 Type: Type-I Location: 14365-15066 bp Gene: COG1203:cas3 Type: Type-I Location: 15077-17398 bp Gene: pfam01930:cas4 Type: Type-I Location: 17413-17964 bp Gene: cd09722:cas1 Type: universal Location: 17967-18947 bp Gene: cd09725:cas2 Type: universal Location: 18950-19216 bp CRISPR array Location: 19400-21990 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 19400-21990 bp Num of repeats: 40 Spacers: s1-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19400-21990 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUTY01000002.1 Clostridioides difficile strain CD20 genome assembly, contig: ERS368465SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 296528 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104138-104761 bp Zoom in on locus 1 x10 CRISPR array Location: 104138-104761 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104138-104761 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104138-104761 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)