CRISPRone

CRISPRone report for GCA_900166325.1_11670_1_47

♦ Seq 1: FUUA01000002.1 Clostridioides difficile strain CD44 genome assembly, contig: ERS368489SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 608658 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 305127-316210 bp Zoom in on locus 1 x24 CRISPR array Location: 305127-306672 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 305127-306672 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 306856-307122 bp Gene: cd09722:cas1 Type: universal Location: 307125-308105 bp Gene: pfam01930:cas4 Type: Type-I Location: 308108-308626 bp Gene: cd09641:cas3HD Type: Type-I Location: 308674-310995 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 311006-311707 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 311709-312623 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 312625-313911 bp Gene: unk Type: unknown Location: 313969-314475 bp Gene: pfam01881:cas6 Type: other Location: 314481-315275 bp Gene: pfam13280:WYL Type: other Location: 315296-316210 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 305127-306672 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FUUA01000003.1 Clostridioides difficile strain CD44 genome assembly, contig: ERS368489SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 322475 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 229348-229575 bp Zoom in on locus 1 x4 CRISPR array Location: 229348-229575 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 229348-229575 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 229348-229575 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FUUA01000021.1 Clostridioides difficile strain CD44 genome assembly, contig: ERS368489SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 59107 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37025-37318 bp Zoom in on locus 1 x5 CRISPR array Location: 37025-37318 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 37025-37318 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 37025-37318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: FUUA01000015.1 Clostridioides difficile strain CD44 genome assembly, contig: ERS368489SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 115019 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18193-18747 bp 2 Locus 2: 99299-99589 bp Zoom in on locus 1 x9 Zoom in on locus 2 x5 CRISPR array Location: 18193-18747 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 18193-18747 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 99299-99589 bp Num of repeats: 5 Spacers: s9-s12 CRISPR array Location: 99299-99589 bp Num of repeats: 5 Spacers: s9-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18193-18747 bp]: array | spacers
           [Locus range 99299-99589 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: FUUA01000001.1 Clostridioides difficile strain CD44 genome assembly, contig: ERS368489SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 776873 bp; # of CRISPR array = 2; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 280713-281196 bp 2 Locus 2: 446538-456270 bp 3 Locus 3: 531461-532020 bp Zoom in on locus 1 x8 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 280713-281196 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 280713-281196 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09641:cas3HD Type: Type-I Location: 446538-448946 bp Gene: cd09693:cas5 Type: Type-I Location: 448973-449770 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 449786-450799 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 450819-452294 bp Gene: pfam01881:cas6 Type: other Location: 452299-453036 bp Gene: unk Type: unknown Location: 453350-453808 bp Gene: cas14:cas14 Type: Type-V Location: 453836-455008 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 455161-456270 bp CRISPR array Location: 531461-532020 bp Num of repeats: 9 Spacers: s8-s15 CRISPR array Location: 531461-532020 bp Num of repeats: 9 Spacers: s8-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 280713-281196 bp]: array | spacers
           [Locus range 531461-532020 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: FUUA01000007.1 Clostridioides difficile strain CD44 genome assembly, contig: ERS368489SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 207269 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90900-91322 bp Zoom in on locus 1 x7 CRISPR array Location: 90900-91322 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 90900-91322 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90900-91322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: FUUA01000029.1 Clostridioides difficile strain CD44 genome assembly, contig: ERS368489SCcontig000029, whole genome shotgun sequence

⇒Summary: seq-len = 11270 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3523-9325 bp Zoom in on locus 1 x2 x5 x6 CRISPR array Location: 3523-3617 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3523-3617 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 6029-6321 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 6029-6321 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 8965-9325 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 8965-9325 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3523-3617 bp]: array | spacers
           [Locus range 6029-6321 bp]: array | spacers
           [Locus range 8965-9325 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: FUUA01000008.1 Clostridioides difficile strain CD44 genome assembly, contig: ERS368489SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 169636 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111496-112913 bp Zoom in on locus 1 x22 CRISPR array Location: 111496-112913 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 111496-112913 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111496-112913 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)